Chlorine in PDB 7h8w: Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)

Enzymatic activity of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)

All present enzymatic activity of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316):
3.1.3.84;

Protein crystallography data

The structure of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316), PDB code: 7h8w was solved by J.C.Aschenbrenner, M.Fairhead, A.S.Godoy, B.H.Balcomb, E.Capkin, A.V.Chandran, I.Dolci, M.Golding, L.Koekemoer, R.M.Lithgo, P.G.Marples, X.Ni, G.Oliva, W.Thompson, C.W.E.Tomlinson, C.Wild, M.Winokan, M.-A.E.Xavier, D.Fearon, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.75 / 1.42
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 87.419, 87.419, 85.514, 90, 90, 120
R / Rfree (%) 18.3 / 21.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) (pdb code 7h8w). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316), PDB code: 7h8w:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 7h8w

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Chlorine binding site 1 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:21.1
occ:1.00
 O A:HOH494 3.2 28.2 0.6
O A:HOH381 3.3 17.6 0.6
N A:GLY112 3.3 22.4 1.0
C2 A:DMS202 3.4 32.1 0.6
O A:HOH426 3.4 25.9 0.6
N A:TYR114 3.6 20.1 1.0
CA A:GLY112 3.7 22.3 1.0
N A:VAL113 3.7 23.6 1.0
CB A:TYR114 3.7 19.2 1.0
C A:GLY112 3.8 22.2 1.0
N A:THR111 3.8 18.0 1.0
CA A:SER110 3.9 16.2 1.0
N A:SER110 3.9 15.9 1.0
C A:SER110 4.1 17.2 1.0
O A:HOH408 4.2 35.0 0.6
CA A:TYR114 4.2 19.9 1.0
CG A:TYR114 4.3 19.4 1.0
C A:THR111 4.4 22.7 1.0
C A:VAL113 4.5 24.4 1.0
O A:GLY112 4.5 23.6 1.0
CG2 A:VAL113 4.7 28.6 1.0
CA A:VAL113 4.7 25.1 1.0
CD2 A:TYR114 4.7 18.0 1.0
CA A:THR111 4.7 18.8 1.0
S A:DMS202 4.7 33.0 0.6
CD1 A:TYR114 4.8 20.1 1.0
C1 A:DMS202 4.9 28.5 0.6
C A:TYR114 4.9 19.5 1.0
O A:HOH392 4.9 30.1 0.6
O A:HOH398 5.0 27.9 0.6
O A:SER110 5.0 19.2 1.0

Chlorine binding site 2 out of 10 in 7h8w

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Chlorine binding site 2 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:22.5
occ:1.00
 N A:ARG144 3.2 19.2 1.0
O A:HOH382 3.3 26.7 0.6
N A:ASP145 3.4 21.3 1.0
O A:HOH473 3.7 41.6 0.6
CB A:CYS143 3.8 18.4 1.0
CB A:ASP145 3.8 24.4 1.0
O A:DMS203 3.9 49.7 1.0
C1 A:DMS203 4.0 55.4 1.0
CE3 A:TRP148 4.0 22.5 1.0
CA A:CYS143 4.0 17.3 1.0
CA A:ARG144 4.1 20.1 1.0
C A:CYS143 4.1 16.4 1.0
C A:ARG144 4.2 22.1 1.0
CD2 A:TRP148 4.2 22.2 1.0
CA A:ASP145 4.2 24.9 1.0
CB A:TRP148 4.3 21.4 1.0
CB A:ARG144 4.3 22.7 1.0
CG A:TRP148 4.4 22.4 1.0
S A:DMS203 4.5 66.4 1.0
CZ3 A:TRP148 4.7 22.6 1.0
O A:HOH332 4.8 22.0 1.0
SG A:CYS143 4.9 20.6 1.0

Chlorine binding site 3 out of 10 in 7h8w

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Chlorine binding site 3 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:27.2
occ:1.00
 NZ A:LYS13 3.4 26.2 1.0
N A:ASP10 3.5 18.1 1.0
CB B:PRO42 3.7 24.4 1.0
C1 A:DMS211 3.7 27.7 0.5
CG B:PRO42 3.8 23.9 1.0
CE A:LYS13 3.8 26.9 1.0
CB A:ASP10 3.9 19.6 1.0
CB A:MET9 3.9 19.8 1.0
CD A:LYS13 3.9 25.2 1.0
CA A:MET9 4.0 18.4 1.0
OH B:TYR38 4.1 34.6 1.0
NH2 A:ARG144 4.1 32.5 1.0
C A:MET9 4.2 17.7 1.0
CA A:ASP10 4.3 17.5 1.0
CE2 B:TYR38 4.3 30.2 1.0
CZ B:TYR38 4.4 33.8 1.0
O A:DMS211 4.5 27.6 0.5
CZ A:ARG144 4.7 31.6 1.0
O A:HOH303 4.8 40.5 0.6
S A:DMS211 4.9 30.1 0.5

Chlorine binding site 4 out of 10 in 7h8w

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Chlorine binding site 4 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl204

b:26.8
occ:1.00
 N B:ARG144 3.2 28.4 1.0
O B:HOH394 3.3 31.9 0.6
N B:ASP145 3.5 33.5 1.0
C1 B:DMS203 3.7 60.1 1.0
CB B:CYS143 3.8 25.9 1.0
O B:DMS203 3.8 56.8 1.0
CB B:ASP145 3.9 35.4 1.0
CE3 B:TRP148 3.9 26.8 1.0
CA B:CYS143 4.1 24.1 1.0
CA B:ARG144 4.1 29.5 1.0
C B:CYS143 4.1 25.4 1.0
CD2 B:TRP148 4.2 28.2 1.0
CB B:TRP148 4.2 29.8 1.0
C B:ARG144 4.2 31.9 1.0
CB B:ARG144 4.3 30.1 1.0
S B:DMS203 4.3 64.0 1.0
CA B:ASP145 4.3 34.5 1.0
CG B:TRP148 4.4 30.0 1.0
CZ3 B:TRP148 4.6 25.6 1.0
C2 B:DMS201 4.8 86.6 0.6
CG B:ARG144 4.9 32.8 1.0

Chlorine binding site 5 out of 10 in 7h8w

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Chlorine binding site 5 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:18.1
occ:1.00
 O B:HOH369 3.2 19.1 0.6
N B:GLY112 3.3 19.9 1.0
N B:TYR114 3.5 18.8 1.0
CA B:GLY112 3.6 20.9 1.0
CB B:TYR114 3.7 17.8 1.0
C1 B:DMS202 3.7 37.1 0.6
S B:DMS201 3.7 89.6 0.6
N B:VAL113 3.7 20.8 0.6
C B:GLY112 3.8 20.1 1.0
N B:THR111 3.9 17.8 1.0
CA B:SER110 3.9 17.5 1.0
O B:HOH405 3.9 31.9 0.6
N B:SER110 3.9 17.1 1.0
O B:DMS201 4.0 87.0 0.6
C B:SER110 4.1 19.3 1.0
CA B:TYR114 4.2 18.9 1.0
CG B:TYR114 4.2 17.3 1.0
CG2 B:VAL113 4.3 23.1 0.6
C B:THR111 4.4 20.2 1.0
S B:DMS202 4.5 37.9 0.6
C B:VAL113 4.5 21.3 0.6
C1 B:DMS201 4.5 85.5 0.6
O B:GLY112 4.6 20.7 1.0
CA B:VAL113 4.6 21.7 0.6
CD2 B:TYR114 4.7 17.5 1.0
CD1 B:TYR114 4.8 16.9 1.0
CA B:THR111 4.8 17.6 1.0
O B:HOH379 4.9 24.4 0.6
C B:TYR114 4.9 18.3 1.0
O B:SER110 4.9 18.8 1.0

Chlorine binding site 6 out of 10 in 7h8w

Go back to Chlorine Binding Sites List in 7h8w
Chlorine binding site 6 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:39.4
occ:1.00
 O C:HOH423 3.0 48.0 1.0
N C:ARG144 3.3 31.0 1.0
O C:DMS208 3.4 80.1 1.0
N C:ASP145 3.5 31.7 1.0
CB C:CYS143 3.7 24.8 1.0
CB C:ASP145 3.8 34.4 1.0
CE3 C:TRP148 3.9 26.5 1.0
CA C:CYS143 4.1 23.9 1.0
CD2 C:TRP148 4.1 26.5 1.0
CB C:TRP148 4.1 27.6 1.0
CA C:ARG144 4.1 32.9 1.0
C1 C:DMS208 4.2 84.2 1.0
C C:CYS143 4.2 25.9 1.0
S C:DMS208 4.2 86.0 1.0
CG C:TRP148 4.2 27.9 1.0
O C:HOH370 4.2 45.0 1.0
CB C:ARG144 4.3 41.3 1.0
C C:ARG144 4.3 35.9 1.0
CA C:ASP145 4.3 33.8 1.0
CZ3 C:TRP148 4.6 27.9 1.0
SG C:CYS143 4.9 26.1 1.0
O C:HOH332 4.9 28.6 0.5
O C:ASP145 4.9 27.6 1.0
CE2 C:TRP148 5.0 29.6 1.0

Chlorine binding site 7 out of 10 in 7h8w

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Chlorine binding site 7 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl203

b:37.0
occ:1.00
 O B:HOH415 3.0 42.8 0.6
N C:VAL52 3.5 26.3 1.0
CA C:PRO51 3.6 28.4 1.0
O C:HOH384 3.7 37.4 0.6
CB C:PRO51 3.8 28.5 1.0
O C:HOH310 3.9 35.1 0.6
CE B:MET9 3.9 35.7 1.0
CB C:PRO25 4.0 27.9 1.0
C C:PRO51 4.1 30.0 1.0
CB B:MET9 4.1 34.6 1.0
CG2 C:VAL52 4.1 25.1 1.0
CD B:LYS13 4.2 34.1 0.6
CB C:VAL52 4.5 23.7 1.0
CG C:PRO25 4.5 29.9 1.0
SD B:MET9 4.6 39.4 1.0
CA C:VAL52 4.6 23.8 1.0
N C:PRO51 4.8 27.7 1.0
CG C:PRO51 4.8 29.8 1.0
CG B:MET9 5.0 33.8 1.0

Chlorine binding site 8 out of 10 in 7h8w

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Chlorine binding site 8 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl207

b:28.3
occ:0.59
 O C:HOH379 3.3 22.2 0.6
N C:GLY112 3.4 27.9 1.0
O C:DMS201 3.4 62.5 1.0
N C:TYR114 3.5 28.6 1.0
CB C:TYR114 3.6 23.7 1.0
N C:VAL113 3.7 32.0 0.6
CA C:GLY112 3.8 30.5 1.0
S C:DMS201 3.8 84.2 1.0
N C:THR111 3.9 20.5 1.0
CG2 C:VAL113 3.9 36.0 0.6
O C:HOH346 3.9 42.0 0.6
C C:GLY112 3.9 30.4 1.0
N C:SER110 4.0 18.0 1.0
CA C:SER110 4.0 18.4 1.0
C2 C:DMS201 4.1 78.2 1.0
CG C:TYR114 4.1 23.4 1.0
C2 C:DMS206 4.1 86.3 1.0
CA C:TYR114 4.1 24.9 1.0
C C:SER110 4.2 19.9 1.0
C C:THR111 4.5 26.6 1.0
C C:VAL113 4.5 31.7 0.6
CA C:VAL113 4.6 33.2 0.6
CD2 C:TYR114 4.6 26.9 1.0
S C:DMS206 4.7 86.5 1.0
O C:GLY112 4.7 27.8 1.0
CD1 C:TYR114 4.8 24.1 1.0
CA C:THR111 4.8 20.9 1.0
O C:DMS206 4.8 70.2 1.0
CB C:VAL113 4.9 35.4 0.6
C C:TYR114 4.9 23.2 1.0
CB C:ALA22 5.0 19.7 1.0

Chlorine binding site 9 out of 10 in 7h8w

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Chlorine binding site 9 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl206

b:35.9
occ:1.00
 N D:ARG144 3.3 33.0 0.6
CB D:CYS143 3.6 32.2 1.0
N D:ASP145 3.6 36.4 1.0
O D:HOH435 3.8 55.0 1.0
CB D:ASP145 3.9 42.6 1.0
CA D:CYS143 3.9 30.6 1.0
CE3 D:TRP148 3.9 36.0 1.0
C D:CYS143 4.1 30.9 1.0
CB D:TRP148 4.1 35.5 1.0
CD2 D:TRP148 4.1 36.9 1.0
CA D:ARG144 4.2 34.9 0.6
CG D:TRP148 4.2 39.2 1.0
C D:ARG144 4.4 36.3 0.6
CA D:ASP145 4.4 39.7 1.0
CB D:ARG144 4.5 37.8 0.6
CZ3 D:TRP148 4.7 39.9 1.0
O D:HOH306 4.9 25.6 0.6
SG D:CYS143 4.9 32.1 1.0

Chlorine binding site 10 out of 10 in 7h8w

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Chlorine binding site 10 out of 10 in the Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain -- Crystal Structure of Chikungunya Virus NSP3 Macrodomain in Complex with Z19674820 (CHIKV_MACB-X1316) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl207

b:24.0
occ:1.00
 O D:HOH377 3.3 20.6 0.6
N D:GLY112 3.4 27.7 1.0
C2 D:DMS201 3.4 40.5 0.6
S D:DMS201 3.5 42.2 0.6
N D:TYR114 3.6 22.3 1.0
CB D:TYR114 3.7 19.5 1.0
CA D:GLY112 3.8 29.7 1.0
N D:THR111 3.8 23.5 1.0
N D:SER110 3.9 19.4 1.0
CA D:SER110 3.9 21.2 1.0
C2 D:DMS204 3.9 40.3 0.6
N D:VAL113 3.9 26.6 1.0
O D:DMS201 4.0 41.3 0.6
C D:GLY112 4.0 29.8 1.0
C D:SER110 4.0 23.1 1.0
O D:HOH388 4.0 34.8 0.6
CG D:TYR114 4.2 18.0 1.0
CA D:TYR114 4.2 20.4 1.0
C1 D:DMS204 4.4 41.3 0.6
C D:THR111 4.5 28.8 1.0
C D:VAL113 4.6 22.4 1.0
CG2 D:VAL113 4.7 32.1 1.0
CA D:THR111 4.7 25.2 1.0
CD2 D:TYR114 4.7 18.3 1.0
O D:GLY112 4.7 30.2 1.0
CA D:VAL113 4.8 27.9 1.0
CD1 D:TYR114 4.8 18.7 1.0
S D:DMS204 4.9 42.0 0.6
O D:SER110 4.9 23.8 1.0
C D:LEU109 4.9 19.3 1.0
C D:TYR114 5.0 22.3 1.0

Reference:

J.C.Aschenbrenner, M.Fairhead, A.S.Godoy, B.H.Balcomb, E.Capkin, A.V.Chandran, I.Dolci, M.Golding, L.Koekemoer, R.M.Lithgo, P.G.Marples, X.Ni, G.Oliva, W.Thompson, C.W.E.Tomlinson, C.Wild, M.Winokan, M.-A.E.Xavier, D.Fearon, F.Von Delft. Group Deposition For Crystallographic Fragment Screening of Chikungunya Virus NSP3 Macrodomain To Be Published.
Page generated: Mon Jul 29 22:49:06 2024

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