Chlorine in PDB 7jxt: Structure of the Ovine Cox-1 Bound to Compound 2A
Enzymatic activity of Structure of the Ovine Cox-1 Bound to Compound 2A
All present enzymatic activity of Structure of the Ovine Cox-1 Bound to Compound 2A:
1.14.99.1;
Protein crystallography data
The structure of Structure of the Ovine Cox-1 Bound to Compound 2A, PDB code: 7jxt
was solved by
Y.Ko,
M.Iaselli,
M.Miciaccia,
L.Friedrich,
G.Schneider,
A.Scilimati,
G.Cingolani,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
14.99 /
3.35
|
Space group
|
P 65
|
Cell size a, b, c (Å), α, β, γ (°)
|
181.6,
181.6,
103.401,
90,
90,
120
|
R / Rfree (%)
|
21 /
25
|
Other elements in 7jxt:
The structure of Structure of the Ovine Cox-1 Bound to Compound 2A also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of the Ovine Cox-1 Bound to Compound 2A
(pdb code 7jxt). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Structure of the Ovine Cox-1 Bound to Compound 2A, PDB code: 7jxt:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7jxt
Go back to
Chlorine Binding Sites List in 7jxt
Chlorine binding site 1 out
of 4 in the Structure of the Ovine Cox-1 Bound to Compound 2A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of the Ovine Cox-1 Bound to Compound 2A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl602
b:144.4
occ:1.00
|
CL17
|
A:W8M602
|
0.0
|
144.4
|
1.0
|
C04
|
A:W8M602
|
1.8
|
144.4
|
1.0
|
HG
|
A:SER530
|
1.9
|
99.4
|
1.0
|
OG
|
A:SER530
|
2.7
|
106.2
|
1.0
|
C03
|
A:W8M602
|
2.7
|
144.4
|
1.0
|
C05
|
A:W8M602
|
2.8
|
144.4
|
1.0
|
H031
|
A:W8M602
|
2.9
|
122.0
|
1.0
|
HG22
|
A:VAL349
|
3.0
|
129.5
|
1.0
|
HG21
|
A:VAL349
|
3.0
|
129.5
|
1.0
|
N08
|
A:W8M602
|
3.1
|
144.4
|
1.0
|
C07
|
A:W8M602
|
3.1
|
144.4
|
1.0
|
HB2
|
A:SER530
|
3.3
|
91.0
|
1.0
|
CB
|
A:SER530
|
3.4
|
97.7
|
1.0
|
HB3
|
A:SER530
|
3.4
|
91.0
|
1.0
|
HE2
|
A:TYR348
|
3.4
|
116.6
|
1.0
|
CG2
|
A:VAL349
|
3.4
|
125.1
|
1.0
|
HD23
|
A:LEU352
|
3.6
|
122.3
|
1.0
|
HG23
|
A:VAL349
|
3.9
|
129.5
|
1.0
|
HD2
|
A:TYR348
|
4.0
|
117.3
|
1.0
|
C02
|
A:W8M602
|
4.0
|
144.4
|
1.0
|
C06
|
A:W8M602
|
4.0
|
144.4
|
1.0
|
C19
|
A:W8M602
|
4.2
|
144.4
|
1.0
|
CE2
|
A:TYR348
|
4.2
|
113.7
|
1.0
|
H211
|
A:W8M602
|
4.3
|
122.0
|
1.0
|
C10
|
A:W8M602
|
4.3
|
144.4
|
1.0
|
CL18
|
A:W8M602
|
4.3
|
144.4
|
1.0
|
HH2
|
A:TRP387
|
4.3
|
116.7
|
1.0
|
CD2
|
A:LEU352
|
4.3
|
122.9
|
1.0
|
HD22
|
A:LEU352
|
4.4
|
122.3
|
1.0
|
HG13
|
A:VAL349
|
4.4
|
130.1
|
1.0
|
HD21
|
A:LEU352
|
4.4
|
122.3
|
1.0
|
CD2
|
A:TYR348
|
4.6
|
114.1
|
1.0
|
C01
|
A:W8M602
|
4.6
|
144.4
|
1.0
|
HA
|
A:VAL349
|
4.6
|
118.2
|
1.0
|
CB
|
A:VAL349
|
4.7
|
117.7
|
1.0
|
N09
|
A:W8M602
|
4.8
|
144.4
|
1.0
|
CA
|
A:SER530
|
4.8
|
103.4
|
1.0
|
H021
|
A:W8M602
|
4.9
|
122.0
|
1.0
|
CG1
|
A:VAL349
|
4.9
|
127.0
|
1.0
|
H061
|
A:W8M602
|
4.9
|
122.0
|
1.0
|
HG11
|
A:VAL349
|
4.9
|
130.1
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7jxt
Go back to
Chlorine Binding Sites List in 7jxt
Chlorine binding site 2 out
of 4 in the Structure of the Ovine Cox-1 Bound to Compound 2A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of the Ovine Cox-1 Bound to Compound 2A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl602
b:144.4
occ:1.00
|
CL18
|
A:W8M602
|
0.0
|
144.4
|
1.0
|
C12
|
A:W8M602
|
1.8
|
144.4
|
1.0
|
HD23
|
A:LEU352
|
2.7
|
122.3
|
1.0
|
C13
|
A:W8M602
|
2.7
|
144.4
|
1.0
|
C11
|
A:W8M602
|
2.8
|
144.4
|
1.0
|
H131
|
A:W8M602
|
2.8
|
122.0
|
1.0
|
HB3
|
A:LEU352
|
2.9
|
112.4
|
1.0
|
C05
|
A:W8M602
|
3.1
|
144.4
|
1.0
|
HG13
|
A:VAL349
|
3.1
|
130.1
|
1.0
|
C10
|
A:W8M602
|
3.2
|
144.4
|
1.0
|
C06
|
A:W8M602
|
3.3
|
144.4
|
1.0
|
HG
|
A:LEU352
|
3.3
|
113.7
|
1.0
|
C07
|
A:W8M602
|
3.4
|
144.4
|
1.0
|
CD2
|
A:LEU352
|
3.4
|
122.9
|
1.0
|
HZ
|
A:PHE518
|
3.5
|
123.7
|
1.0
|
HD21
|
A:LEU352
|
3.5
|
122.3
|
1.0
|
C04
|
A:W8M602
|
3.5
|
144.4
|
1.0
|
H061
|
A:W8M602
|
3.6
|
122.0
|
1.0
|
CG
|
A:LEU352
|
3.6
|
114.8
|
1.0
|
CB
|
A:LEU352
|
3.7
|
113.2
|
1.0
|
HB3
|
A:SER353
|
3.9
|
132.0
|
1.0
|
C01
|
A:W8M602
|
3.9
|
144.4
|
1.0
|
HD13
|
A:ILE523
|
4.0
|
121.2
|
1.0
|
C14
|
A:W8M602
|
4.0
|
144.4
|
1.0
|
C03
|
A:W8M602
|
4.0
|
144.4
|
1.0
|
CG1
|
A:VAL349
|
4.1
|
127.0
|
1.0
|
C16
|
A:W8M602
|
4.1
|
144.4
|
1.0
|
HA
|
A:VAL349
|
4.1
|
118.2
|
1.0
|
HA
|
A:SER353
|
4.2
|
129.5
|
1.0
|
C02
|
A:W8M602
|
4.2
|
144.4
|
1.0
|
HD22
|
A:LEU352
|
4.2
|
122.3
|
1.0
|
HB2
|
A:LEU352
|
4.3
|
112.4
|
1.0
|
CL17
|
A:W8M602
|
4.3
|
144.4
|
1.0
|
N09
|
A:W8M602
|
4.3
|
144.4
|
1.0
|
CZ
|
A:PHE518
|
4.4
|
123.6
|
1.0
|
N
|
A:SER353
|
4.4
|
123.4
|
1.0
|
C
|
A:LEU352
|
4.4
|
127.0
|
1.0
|
HG12
|
A:VAL349
|
4.4
|
130.1
|
1.0
|
HG11
|
A:VAL349
|
4.5
|
130.1
|
1.0
|
N08
|
A:W8M602
|
4.5
|
144.4
|
1.0
|
H011
|
A:W8M602
|
4.5
|
122.0
|
1.0
|
HG22
|
A:VAL349
|
4.5
|
129.5
|
1.0
|
C15
|
A:W8M602
|
4.6
|
144.4
|
1.0
|
HG21
|
A:VAL349
|
4.6
|
129.5
|
1.0
|
H
|
A:SER353
|
4.6
|
127.0
|
1.0
|
O
|
A:VAL349
|
4.6
|
118.5
|
1.0
|
CA
|
A:SER353
|
4.7
|
126.6
|
1.0
|
CB
|
A:SER353
|
4.7
|
129.1
|
1.0
|
CD1
|
A:ILE523
|
4.7
|
123.9
|
1.0
|
CA
|
A:LEU352
|
4.7
|
115.9
|
1.0
|
HD12
|
A:ILE523
|
4.7
|
121.2
|
1.0
|
H031
|
A:W8M602
|
4.7
|
122.0
|
1.0
|
HD11
|
A:ILE523
|
4.8
|
121.2
|
1.0
|
HE1
|
A:PHE518
|
4.8
|
135.6
|
1.0
|
O
|
A:LEU352
|
4.8
|
135.6
|
1.0
|
CB
|
A:VAL349
|
4.8
|
117.7
|
1.0
|
CA
|
A:VAL349
|
4.8
|
114.2
|
1.0
|
H141
|
A:W8M602
|
4.9
|
122.0
|
1.0
|
CG2
|
A:VAL349
|
4.9
|
125.1
|
1.0
|
H161
|
A:W8M602
|
4.9
|
122.0
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7jxt
Go back to
Chlorine Binding Sites List in 7jxt
Chlorine binding site 3 out
of 4 in the Structure of the Ovine Cox-1 Bound to Compound 2A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of the Ovine Cox-1 Bound to Compound 2A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:133.3
occ:1.00
|
CL17
|
B:W8M602
|
0.0
|
133.3
|
1.0
|
C04
|
B:W8M602
|
1.8
|
133.3
|
1.0
|
HG
|
B:SER530
|
2.1
|
116.8
|
1.0
|
C03
|
B:W8M602
|
2.7
|
133.3
|
1.0
|
C05
|
B:W8M602
|
2.8
|
133.3
|
1.0
|
H031
|
B:W8M602
|
2.9
|
119.3
|
1.0
|
OG
|
B:SER530
|
2.9
|
119.5
|
1.0
|
HG22
|
B:VAL349
|
2.9
|
131.0
|
1.0
|
N08
|
B:W8M602
|
3.1
|
133.3
|
1.0
|
C07
|
B:W8M602
|
3.1
|
133.3
|
1.0
|
HG21
|
B:VAL349
|
3.2
|
131.0
|
1.0
|
HE2
|
B:TYR348
|
3.3
|
120.8
|
1.0
|
HB2
|
B:SER530
|
3.4
|
96.4
|
1.0
|
HD23
|
B:LEU352
|
3.5
|
124.0
|
1.0
|
CG2
|
B:VAL349
|
3.5
|
125.0
|
1.0
|
CB
|
B:SER530
|
3.5
|
99.4
|
1.0
|
HB3
|
B:SER530
|
3.5
|
96.4
|
1.0
|
HH
|
B:TYR385
|
3.8
|
116.8
|
1.0
|
HE1
|
B:TYR385
|
3.9
|
126.6
|
1.0
|
OH
|
B:TYR385
|
3.9
|
115.0
|
1.0
|
HG23
|
B:VAL349
|
4.0
|
131.0
|
1.0
|
HD2
|
B:TYR348
|
4.0
|
110.4
|
1.0
|
C02
|
B:W8M602
|
4.0
|
133.3
|
1.0
|
C06
|
B:W8M602
|
4.1
|
133.3
|
1.0
|
HD22
|
B:LEU352
|
4.1
|
124.0
|
1.0
|
H211
|
B:W8M602
|
4.1
|
119.3
|
1.0
|
HH2
|
B:TRP387
|
4.1
|
123.4
|
1.0
|
CE2
|
B:TYR348
|
4.1
|
114.7
|
1.0
|
CD2
|
B:LEU352
|
4.2
|
120.7
|
1.0
|
C19
|
B:W8M602
|
4.2
|
133.3
|
1.0
|
C10
|
B:W8M602
|
4.3
|
133.3
|
1.0
|
HG13
|
B:VAL349
|
4.4
|
123.7
|
1.0
|
HD21
|
B:LEU352
|
4.4
|
124.0
|
1.0
|
CD2
|
B:TYR348
|
4.5
|
104.3
|
1.0
|
CL18
|
B:W8M602
|
4.5
|
133.3
|
1.0
|
HA
|
B:VAL349
|
4.5
|
114.0
|
1.0
|
C01
|
B:W8M602
|
4.6
|
133.3
|
1.0
|
CE1
|
B:TYR385
|
4.6
|
125.5
|
1.0
|
CB
|
B:VAL349
|
4.7
|
113.0
|
1.0
|
CZ
|
B:TYR385
|
4.7
|
117.9
|
1.0
|
N09
|
B:W8M602
|
4.8
|
133.3
|
1.0
|
CG1
|
B:VAL349
|
4.9
|
118.9
|
1.0
|
H021
|
B:W8M602
|
4.9
|
119.3
|
1.0
|
H061
|
B:W8M602
|
4.9
|
119.3
|
1.0
|
HG11
|
B:VAL349
|
4.9
|
123.7
|
1.0
|
HH
|
B:TYR348
|
4.9
|
119.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7jxt
Go back to
Chlorine Binding Sites List in 7jxt
Chlorine binding site 4 out
of 4 in the Structure of the Ovine Cox-1 Bound to Compound 2A
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Structure of the Ovine Cox-1 Bound to Compound 2A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl602
b:133.3
occ:1.00
|
CL18
|
B:W8M602
|
0.0
|
133.3
|
1.0
|
C12
|
B:W8M602
|
1.8
|
133.3
|
1.0
|
C13
|
B:W8M602
|
2.7
|
133.3
|
1.0
|
C11
|
B:W8M602
|
2.8
|
133.3
|
1.0
|
H131
|
B:W8M602
|
2.8
|
119.3
|
1.0
|
HB3
|
B:LEU352
|
3.0
|
112.8
|
1.0
|
HG13
|
B:VAL349
|
3.0
|
123.7
|
1.0
|
HD23
|
B:LEU352
|
3.0
|
124.0
|
1.0
|
C05
|
B:W8M602
|
3.2
|
133.3
|
1.0
|
C10
|
B:W8M602
|
3.3
|
133.3
|
1.0
|
C06
|
B:W8M602
|
3.3
|
133.3
|
1.0
|
HB3
|
B:SER353
|
3.4
|
124.1
|
1.0
|
C07
|
B:W8M602
|
3.4
|
133.3
|
1.0
|
H061
|
B:W8M602
|
3.5
|
119.3
|
1.0
|
HZ
|
B:PHE518
|
3.6
|
116.1
|
1.0
|
HG
|
B:LEU352
|
3.6
|
119.5
|
1.0
|
C04
|
B:W8M602
|
3.7
|
133.3
|
1.0
|
CD2
|
B:LEU352
|
3.8
|
120.7
|
1.0
|
HA
|
B:SER353
|
3.8
|
124.8
|
1.0
|
CB
|
B:LEU352
|
3.8
|
110.3
|
1.0
|
HD13
|
B:ILE523
|
3.9
|
131.4
|
1.0
|
CG
|
B:LEU352
|
3.9
|
117.0
|
1.0
|
C01
|
B:W8M602
|
3.9
|
133.3
|
1.0
|
CG1
|
B:VAL349
|
4.0
|
118.9
|
1.0
|
HD21
|
B:LEU352
|
4.0
|
124.0
|
1.0
|
C14
|
B:W8M602
|
4.0
|
133.3
|
1.0
|
C16
|
B:W8M602
|
4.1
|
133.3
|
1.0
|
N
|
B:SER353
|
4.1
|
116.7
|
1.0
|
CB
|
B:SER353
|
4.2
|
119.6
|
1.0
|
C03
|
B:W8M602
|
4.2
|
133.3
|
1.0
|
HA
|
B:VAL349
|
4.2
|
114.0
|
1.0
|
CA
|
B:SER353
|
4.3
|
120.5
|
1.0
|
HG12
|
B:VAL349
|
4.3
|
123.7
|
1.0
|
C
|
B:LEU352
|
4.3
|
121.6
|
1.0
|
H
|
B:SER353
|
4.3
|
121.7
|
1.0
|
C02
|
B:W8M602
|
4.3
|
133.3
|
1.0
|
N09
|
B:W8M602
|
4.3
|
133.3
|
1.0
|
HG11
|
B:VAL349
|
4.3
|
123.7
|
1.0
|
HB2
|
B:LEU352
|
4.4
|
112.8
|
1.0
|
CZ
|
B:PHE518
|
4.4
|
113.5
|
1.0
|
O
|
B:VAL349
|
4.5
|
118.4
|
1.0
|
HD12
|
B:ILE523
|
4.5
|
131.4
|
1.0
|
H011
|
B:W8M602
|
4.5
|
119.3
|
1.0
|
CL17
|
B:W8M602
|
4.5
|
133.3
|
1.0
|
CD1
|
B:ILE523
|
4.5
|
128.4
|
1.0
|
C15
|
B:W8M602
|
4.6
|
133.3
|
1.0
|
HD22
|
B:LEU352
|
4.6
|
124.0
|
1.0
|
N08
|
B:W8M602
|
4.6
|
133.3
|
1.0
|
HB2
|
B:SER353
|
4.6
|
124.1
|
1.0
|
O
|
B:LEU352
|
4.6
|
119.6
|
1.0
|
HD11
|
B:ILE523
|
4.7
|
131.4
|
1.0
|
HE1
|
B:PHE518
|
4.7
|
127.1
|
1.0
|
CA
|
B:LEU352
|
4.7
|
110.7
|
1.0
|
HG22
|
B:VAL349
|
4.7
|
131.0
|
1.0
|
CB
|
B:VAL349
|
4.9
|
113.0
|
1.0
|
H141
|
B:W8M602
|
4.9
|
119.3
|
1.0
|
HG21
|
B:VAL349
|
4.9
|
131.0
|
1.0
|
CA
|
B:VAL349
|
4.9
|
108.9
|
1.0
|
H161
|
B:W8M602
|
4.9
|
119.3
|
1.0
|
H031
|
B:W8M602
|
5.0
|
119.3
|
1.0
|
|
Reference:
G.Cingolani,
Y.Ko,
M.Iaselli.
Structure of the Ovine Cox-1 Bound to Lf-Mp-1A To Be Published.
Page generated: Mon Jul 29 23:21:03 2024
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