Chlorine in PDB 7jyy: Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam)., PDB code: 7jyy was solved by G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.97 / 2.05
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 166.948, 166.948, 98.810, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 18.5

Other elements in 7jyy:

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 4 atoms
Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). (pdb code 7jyy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam)., PDB code: 7jyy:

Chlorine binding site 1 out of 1 in 7jyy

Go back to Chlorine Binding Sites List in 7jyy
Chlorine binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl7104

b:86.1
occ:1.00
OG A:SER6797 2.9 87.3 1.0
CB A:ASN6827 3.4 50.8 1.0
CG A:ASN6827 3.4 52.3 1.0
ND2 A:ASN6827 3.4 52.3 1.0
O A:HOH7302 3.5 38.7 0.4
O A:HOH7356 3.8 39.6 0.5
CB A:PRO7034 3.9 46.1 1.0
OE1 A:GLN6826 4.0 76.5 1.0
OD1 A:ASN6827 4.0 49.6 1.0
N A:ASN6827 4.1 53.0 1.0
O A:HOH7333 4.2 49.3 1.0
CB A:GLN6826 4.2 58.6 1.0
O A:ILE7035 4.2 38.3 1.0
CB A:SER6797 4.3 91.4 1.0
CA A:ASN6827 4.3 52.1 1.0
CG A:GLN6826 4.4 68.5 1.0
C A:GLN6826 4.4 53.6 1.0
CD A:GLN6826 4.4 74.0 1.0
CA A:PRO7034 4.8 43.2 1.0
C A:ILE7035 4.8 38.4 1.0
N A:ILE7035 4.9 39.6 1.0
O A:HOH7287 4.9 44.3 1.0
CA A:GLN6826 4.9 53.1 1.0
O A:GLN6826 5.0 56.8 1.0

Reference:

G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA)Pupupapapa (Cap-0) and S-Adenosylmethionine (Sam). To Be Published.
Page generated: Sun Dec 13 10:32:21 2020

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