Chlorine in PDB 7kt8: Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN), PDB code: 7kt8 was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.76 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.891, 68.503, 110.793, 90, 90, 90
R / Rfree (%) 16.8 / 19.1

Other elements in 7kt8:

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) also contains other interesting chemical elements:

Sodium (Na) 1 atom
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) (pdb code 7kt8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN), PDB code: 7kt8:

Chlorine binding site 1 out of 1 in 7kt8

Go back to Chlorine Binding Sites List in 7kt8
Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl510

b:47.8
occ:1.00
 O A:HOH760 3.0 53.5 1.0
CB A:SER172 3.2 51.4 1.0
N A:ARG175 3.3 24.3 0.4
N A:ARG175 3.3 23.6 0.6
CA A:SER172 3.3 33.1 1.0
N A:GLY174 3.4 28.4 1.0
C A:SER172 3.4 31.6 1.0
NH1 A:ARG175 3.5 37.7 0.6
CG A:ARG175 3.6 25.6 0.4
O A:SER172 3.8 29.6 1.0
N A:GLU173 3.8 27.3 0.5
CA A:GLY174 3.8 27.2 1.0
N A:GLU173 3.8 27.6 0.5
CG A:ARG175 3.8 24.7 0.6
CD A:ARG175 3.9 30.3 0.6
C A:GLY174 4.0 26.5 1.0
CB A:ARG175 4.1 26.4 0.6
CB A:ARG175 4.1 25.6 0.4
OG A:SER172 4.3 72.4 1.0
CA A:ARG175 4.3 24.9 0.4
CA A:ARG175 4.3 25.0 0.6
C A:GLU173 4.3 24.2 0.5
O6 D:DG1 4.3 26.4 1.0
C A:GLU173 4.3 24.0 0.5
O A:HOH677 4.4 45.4 1.0
CD A:ARG175 4.4 27.0 0.4
CZ A:ARG175 4.5 35.3 0.6
CA A:GLU173 4.7 32.8 0.5
C6 D:DG1 4.7 26.1 1.0
CA A:GLU173 4.7 32.6 0.5
NE A:ARG175 4.7 32.9 0.6
N A:SER172 4.8 27.7 1.0
NE A:ARG175 4.9 35.9 0.4
N7 D:DG1 4.9 25.6 1.0
C5 D:DG1 4.9 24.6 1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) To Be Published.
Page generated: Mon Jul 29 23:44:33 2024

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