Chlorine in PDB 7kt8: Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN), PDB code: 7kt8 was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	41.76 / 1.70
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	59.891, 68.503, 110.793, 90, 90, 90
*R / R_free (%)*	16.8 / 19.1

Other elements in 7kt8:

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) also contains other interesting chemical elements:

Sodium	(Na)	1 atom
Magnesium	(Mg)	2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) (pdb code 7kt8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN), PDB code: 7kt8:

Chlorine binding site 1 out of 1 in 7kt8

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Chlorine Binding Sites List in 7kt8

Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN)

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl510 b:47.8 occ:1.00	O	A:HOH760	3.0	53.5	1.0
	CB	A:SER172	3.2	51.4	1.0
	N	A:ARG175	3.3	24.3	0.4
	N	A:ARG175	3.3	23.6	0.6
	CA	A:SER172	3.3	33.1	1.0
	N	A:GLY174	3.4	28.4	1.0
	C	A:SER172	3.4	31.6	1.0
	NH1	A:ARG175	3.5	37.7	0.6
	CG	A:ARG175	3.6	25.6	0.4
	O	A:SER172	3.8	29.6	1.0
	N	A:GLU173	3.8	27.3	0.5
	CA	A:GLY174	3.8	27.2	1.0
	N	A:GLU173	3.8	27.6	0.5
	CG	A:ARG175	3.8	24.7	0.6
	CD	A:ARG175	3.9	30.3	0.6
	C	A:GLY174	4.0	26.5	1.0
	CB	A:ARG175	4.1	26.4	0.6
	CB	A:ARG175	4.1	25.6	0.4
	OG	A:SER172	4.3	72.4	1.0
	CA	A:ARG175	4.3	24.9	0.4
	CA	A:ARG175	4.3	25.0	0.6
	C	A:GLU173	4.3	24.2	0.5
	O6	D:DG1	4.3	26.4	1.0
	C	A:GLU173	4.3	24.0	0.5
	O	A:HOH677	4.4	45.4	1.0
	CD	A:ARG175	4.4	27.0	0.4
	CZ	A:ARG175	4.5	35.3	0.6
	CA	A:GLU173	4.7	32.8	0.5
	C6	D:DG1	4.7	26.1	1.0
	CA	A:GLU173	4.7	32.6	0.5
	NE	A:ARG175	4.7	32.9	0.6
	N	A:SER172	4.8	27.7	1.0
	NE	A:ARG175	4.9	35.9	0.4
	N7	D:DG1	4.9	25.6	1.0
	C5	D:DG1	4.9	24.6	1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (180MIN) To Be Published.

Page generated: Fri Dec 17 08:51:21 2021

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