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Chlorine in PDB 7kt9: Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN)

Enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN)

All present enzymatic activity of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN):
2.7.7.7;

Protein crystallography data

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN), PDB code: 7kt9 was solved by J.A.Jamsen, S.H.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.20 / 1.48
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.283, 68.316, 111.407, 90, 90, 90
R / Rfree (%) 15.5 / 17.6

Other elements in 7kt9:

The structure of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN) also contains other interesting chemical elements:

Sodium (Na) 2 atoms
Magnesium (Mg) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN) (pdb code 7kt9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN), PDB code: 7kt9:

Chlorine binding site 1 out of 1 in 7kt9

Go back to Chlorine Binding Sites List in 7kt9
Chlorine binding site 1 out of 1 in the Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl508

b:33.5
occ:0.78
 OG A:SER172 2.1 28.9 0.2
O A:HOH743 2.8 37.4 1.0
CB A:SER172 3.2 26.9 0.2
N A:ARG175 3.2 16.0 0.5
N A:ARG175 3.2 15.8 0.6
N A:GLY174 3.3 18.9 1.0
C A:SER172 3.3 20.9 0.8
CA A:SER172 3.3 23.8 0.2
CA A:SER172 3.4 23.8 0.8
C A:SER172 3.4 21.3 0.2
CB A:SER172 3.4 26.6 0.8
NH1 A:ARG175 3.6 31.7 0.6
CG A:ARG175 3.6 19.8 0.5
CG A:ARG175 3.7 19.3 0.6
O A:SER172 3.7 20.9 0.8
CA A:GLY174 3.7 17.9 1.0
N A:GLU173 3.7 20.4 1.0
O A:SER172 3.8 20.1 0.2
C A:GLY174 4.0 15.7 1.0
CB A:ARG175 4.0 17.7 0.5
CB A:ARG175 4.0 17.8 0.6
CD A:ARG175 4.1 22.8 0.6
CD A:ARG175 4.1 22.5 0.5
CA A:ARG175 4.2 16.5 0.5
OG A:SER172 4.2 29.8 0.8
C A:GLU173 4.2 18.2 1.0
CA A:ARG175 4.3 16.5 0.6
O6 D:DG1 4.3 19.4 1.0
O A:HOH802 4.5 39.1 1.0
CA A:GLU173 4.6 20.3 1.0
CZ A:ARG175 4.6 27.9 0.6
C6 D:DG1 4.7 18.2 1.0
N A:SER172 4.8 24.4 0.2
N A:SER172 4.8 24.0 0.8
NE A:ARG175 4.8 25.9 0.6
N7 D:DG1 4.9 19.1 1.0
C5 D:DG1 4.9 16.5 1.0

Reference:

J.A.Jamsen, A.Sassa, D.D.Shock, W.A.Beard, S.H.Wilson. Dna Polymerase Mu, 8-Oxodgtp:at Product State Ternary Complex, 50 Mm MG2+ (960MIN) To Be Published.
Page generated: Fri Dec 17 08:51:21 2021

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