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Chlorine in PDB 3zty: The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27

Enzymatic activity of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27

All present enzymatic activity of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27, PDB code: 3zty was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.56 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.692, 70.835, 92.735, 90.00, 95.04, 90.00
R / Rfree (%) 19.5 / 25.3

Other elements in 3zty:

The structure of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 also contains other interesting chemical elements:

Gadolinium (Gd) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 (pdb code 3zty). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27, PDB code: 3zty:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 3zty

Go back to Chlorine Binding Sites List in 3zty
Chlorine binding site 1 out of 2 in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl264

b:42.6
occ:1.00
 O A:HOH2004 3.0 23.6 1.0
OG1 A:THR39 3.1 16.3 1.0
O A:HOH2006 3.1 26.8 1.0
N A:ASP8 3.3 36.2 1.0
OD1 A:ASP6 3.4 27.6 1.0
CB A:ASP8 3.6 37.4 1.0
CB A:LEU7 3.9 34.3 1.0
N A:LEU7 4.0 31.5 1.0
CG A:ASP8 4.0 38.8 1.0
CA A:ASP8 4.0 38.0 1.0
N A:ALA40 4.1 15.4 1.0
CB A:THR39 4.1 16.1 1.0
CA A:LEU7 4.2 34.3 1.0
C A:LEU7 4.2 36.3 1.0
GD A:GD261 4.3 42.6 1.0
CE A:LYS41 4.3 18.7 1.0
CG A:ASP6 4.3 28.4 1.0
O A:HOH2085 4.4 28.1 1.0
CG A:LYS41 4.4 16.5 1.0
O A:ASP8 4.4 35.3 1.0
OD2 A:ASP8 4.4 38.8 1.0
OD1 A:ASP8 4.4 40.0 1.0
CA A:THR39 4.5 15.9 1.0
CD A:LYS41 4.6 17.6 1.0
OD2 A:ASP6 4.7 29.7 1.0
C A:ASP8 4.8 37.7 1.0
CB A:ALA40 4.8 15.5 1.0
N A:LYS41 4.8 14.9 1.0
C A:THR39 4.9 15.2 1.0
CG A:LEU7 5.0 33.6 1.0
CA A:ALA40 5.0 14.9 1.0

Chlorine binding site 2 out of 2 in 3zty

Go back to Chlorine Binding Sites List in 3zty
Chlorine binding site 2 out of 2 in the The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The 3-Dimensional Structure of the Gadolinium Derivative of Mpgp, the Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl264

b:52.0
occ:1.00
 O B:HOH2003 2.9 25.9 1.0
O B:HOH2001 2.9 47.6 1.0
OD1 B:ASP6 3.1 28.1 1.0
N B:ASP8 3.2 34.2 1.0
CB B:ASP8 3.4 35.9 1.0
OG1 B:THR39 3.5 19.7 1.0
GD B:GD261 3.6 35.7 1.0
CG B:ASP8 3.8 36.9 1.0
CA B:ASP8 3.8 35.7 1.0
O B:HOH2050 3.8 23.4 1.0
OD2 B:ASP8 4.0 36.4 1.0
N B:LEU7 4.0 30.4 1.0
CG B:ASP6 4.0 28.3 1.0
O B:ASP8 4.1 33.2 1.0
C B:LEU7 4.1 34.3 1.0
CB B:LEU7 4.1 33.7 1.0
CA B:LEU7 4.3 32.9 1.0
OD2 B:ASP6 4.3 29.2 1.0
C B:ASP8 4.5 35.3 1.0
O B:HOH2002 4.5 14.1 1.0
CE B:LYS41 4.5 20.6 1.0
N B:ALA40 4.5 17.0 1.0
CB B:THR39 4.5 20.4 1.0
OD1 B:ASP8 4.5 38.4 1.0
CA B:THR39 4.8 18.8 1.0
CG B:LYS41 4.8 20.1 1.0
CD B:LYS41 5.0 21.1 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3-Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Fri Jul 11 12:30:03 2025

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