Chlorine in PDB 7l0n: Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity

Enzymatic activity of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity

All present enzymatic activity of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity:
3.4.17.23;

Protein crystallography data

The structure of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity, PDB code: 7l0n was solved by G.Snell, N.Czudnochowski, J.Dillen, J.C.Nix, T.I.Croll, D.Corti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.90 / 2.78
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.98, 186.58, 194.52, 90, 96.4, 90
R / Rfree (%) 29 / 32.5

Other elements in 7l0n:

The structure of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Sodium (Na) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 27;

Binding sites:

The binding sites of Chlorine atom in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity (pdb code 7l0n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 27 binding sites of Chlorine where determined in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity, PDB code: 7l0n:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 27 in 7l0n

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Chlorine binding site 1 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl700

b:83.3
occ:1.00
 O B:GLY58 3.5 90.5 1.0
NH1 B:ARG46 3.6 77.8 1.0
CD B:ARG46 3.8 76.8 1.0
C B:GLY58 4.2 90.5 1.0
CZ B:ARG46 4.4 77.1 1.0
CD1 B:ILE59 4.4 90.6 1.0
CA B:GLY58 4.4 90.3 1.0
NE B:ARG46 4.5 76.8 1.0
CB B:ARG46 4.7 75.3 1.0
N B:GLY58 4.8 90.6 1.0
CG B:ARG46 4.8 76.2 1.0

Chlorine binding site 2 out of 27 in 7l0n

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Chlorine binding site 2 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:98.5
occ:1.00
 N A:GLY44 3.4 76.3 1.0
CA A:GLY44 3.9 74.9 1.0
O B:GLY100 4.1 58.3 1.0
NE2 A:GLN43 4.2 87.2 1.0
C A:GLN43 4.4 77.9 1.0
CB A:GLN43 4.5 82.3 1.0
CA A:GLN43 4.6 80.2 1.0
CA B:GLY100 4.6 59.0 1.0
C B:GLY100 4.8 58.2 1.0
C A:GLY44 4.9 73.2 1.0

Chlorine binding site 3 out of 27 in 7l0n

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Chlorine binding site 3 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl700

b:92.1
occ:1.00
 OG1 D:THR20 3.5 77.8 1.0
N D:THR20 3.6 82.9 1.0
CD2 D:LEU13 3.7 85.0 1.0
O D:ARG18 3.9 95.6 1.0
CA D:ALA19 4.0 87.2 1.0
CD1 D:LEU13 4.1 84.7 1.0
C D:ALA19 4.3 85.9 1.0
CG D:LEU13 4.5 85.0 1.0
CA D:THR20 4.6 79.2 1.0
O D:THR20 4.6 76.9 1.0
CB D:THR20 4.6 78.9 1.0
C D:ARG18 4.7 94.2 1.0
N D:ALA19 4.7 90.0 1.0
CD2 D:LEU11 4.8 81.1 1.0
C D:THR20 5.0 77.0 1.0
CB D:ALA19 5.0 87.6 1.0

Chlorine binding site 4 out of 27 in 7l0n

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Chlorine binding site 4 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl700

b:76.6
occ:1.00
 N C:TRP47 3.3 72.7 1.0
N D:PHE98 3.7 59.7 1.0
CA D:THR97 3.8 61.5 1.0
CB C:TRP47 3.9 72.7 1.0
O D:LEU96 4.0 62.8 1.0
CA C:GLU46 4.0 74.1 1.0
CA C:TRP47 4.2 71.9 1.0
C C:GLU46 4.2 73.9 1.0
C D:THR97 4.2 61.0 1.0
CD2 D:PHE98 4.3 57.7 1.0
O C:TRP47 4.4 71.7 1.0
O C:LEU45 4.4 71.5 1.0
CG C:GLU46 4.5 77.5 1.0
CB D:THR97 4.5 62.4 1.0
CB D:PHE98 4.5 58.5 1.0
CG2 D:THR97 4.6 62.7 1.0
N D:THR97 4.7 61.5 1.0
CA D:PHE98 4.7 58.6 1.0
C D:LEU96 4.7 63.0 1.0
C C:TRP47 4.8 71.7 1.0
CB C:GLU46 4.8 75.4 1.0
CG D:PHE98 4.9 58.2 1.0

Chlorine binding site 5 out of 27 in 7l0n

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Chlorine binding site 5 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl701

b:105.1
occ:1.00
 NE2 C:GLN65 3.5 94.8 1.0
CA C:GLY66 4.2 97.4 1.0
N C:GLY66 4.2 96.1 1.0
CG C:GLN65 4.4 95.8 1.0
CD C:GLN65 4.4 95.5 1.0
C C:GLN65 4.7 95.5 1.0

Chlorine binding site 6 out of 27 in 7l0n

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Chlorine binding site 6 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl703

b:81.7
occ:1.00
 NA H:NA704 2.7 56.9 1.0
CE H:LYS75 3.6 76.6 1.0
CD H:LYS75 3.9 76.2 1.0
NZ H:LYS75 3.9 76.0 1.0
OE1 H:GLU72 4.3 89.2 1.0
OE2 H:GLU72 4.8 89.5 1.0
OH H:TYR79 4.8 73.4 1.0
CD H:GLU72 5.0 88.4 1.0

Chlorine binding site 7 out of 27 in 7l0n

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Chlorine binding site 7 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl706

b:82.1
occ:1.00
 OH H:TYR109 3.4 49.6 1.0
NH2 H:ARG97 3.5 59.4 1.0
NA H:NA705 3.7 52.4 1.0
CE1 H:TYR109 3.9 50.2 1.0
CZ H:TYR109 4.1 49.8 1.0
CZ H:ARG97 4.6 59.3 1.0
NH1 H:ARG97 4.8 59.6 1.0
OD2 H:ASP108 4.8 52.8 1.0

Chlorine binding site 8 out of 27 in 7l0n

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Chlorine binding site 8 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl707

b:113.4
occ:1.00
 OG1 L:THR179 3.2 91.1 1.0
OG H:SER186 3.3 83.0 1.0
OG L:SER177 3.9 81.0 1.0
CB H:SER186 4.0 82.5 1.0
N H:SER186 4.2 82.7 1.0
CB L:THR179 4.2 91.3 1.0
C H:LEU185 4.4 82.1 1.0
CB L:SER163 4.5 79.4 1.0
O H:SER184 4.5 83.2 1.0
CB L:SER177 4.6 79.4 1.0
CA H:LEU185 4.6 81.6 1.0
CA H:SER186 4.8 82.4 1.0
C H:SER184 4.8 83.3 1.0
N H:LEU185 4.9 81.8 1.0
CG2 L:THR179 4.9 92.4 1.0
OG H:SER184 4.9 85.7 1.0

Chlorine binding site 9 out of 27 in 7l0n

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Chlorine binding site 9 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Cl701

b:75.4
occ:1.00
 NH2 N:ARG24 3.3 74.9 1.0
CB N:SER7 3.6 56.8 1.0
N L:ARG18 4.0 59.5 1.0
N N:SER7 4.1 57.3 1.0
CZ N:ARG24 4.2 73.7 1.0
CB N:ARG24 4.3 69.0 1.0
CB L:ARG18 4.4 60.7 1.0
O N:THR5 4.4 59.6 1.0
CG2 N:THR5 4.5 62.4 1.0
C N:GLN6 4.5 58.1 1.0
CG2 N:THR22 4.5 68.0 1.0
CA N:SER7 4.5 56.5 1.0
CA N:GLN6 4.6 59.0 1.0
C N:THR5 4.7 60.2 1.0
NH1 N:ARG24 4.7 74.5 1.0
OG N:SER7 4.7 58.1 1.0
CA L:ASP17 4.7 59.7 1.0
CA L:ARG18 4.7 59.2 1.0
OG1 N:THR5 4.8 62.9 1.0
N N:GLN6 4.8 59.2 1.0
CB N:THR22 4.8 66.9 1.0
O L:ARG18 4.8 59.1 1.0
N N:ARG24 4.8 66.5 1.0
C L:ASP17 4.9 60.0 1.0
OD1 L:ASP17 4.9 64.9 1.0
NE N:ARG24 4.9 72.2 1.0

Chlorine binding site 10 out of 27 in 7l0n

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Chlorine binding site 10 out of 27 in the Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Cl702

b:114.0
occ:1.00
 NH1 N:ARG18 3.4 63.5 1.0
OG1 N:THR74 3.4 60.5 1.0
CG2 N:THR74 3.6 60.1 1.0
NE N:ARG18 4.0 60.9 1.0
CB N:THR74 4.1 60.0 1.0
CZ N:ARG18 4.2 62.5 1.0
OG1 N:THR20 4.2 59.6 1.0
CG2 N:THR20 4.3 58.5 1.0
CB N:THR20 4.9 59.0 1.0

Reference:

E.C.Thomson, L.E.Rosen, J.G.Shepherd, R.Spreafico, D.L.Robertson, G.Snell. Circulating Sars-Cov-2 Spike N439K Variants Maintain Fitness While Evading Antibody-Mediated Immunity To Be Published.
Page generated: Mon Jul 29 23:47:45 2024

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