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Chlorine in PDB 7l6t: Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions.

Protein crystallography data

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions., PDB code: 7l6t was solved by G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.33 / 1.78
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 169.351, 169.351, 52.629, 90, 90, 120
R / Rfree (%) 14.1 / 16.2

Other elements in 7l6t:

The structure of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions. (pdb code 7l6t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions., PDB code: 7l6t:

Chlorine binding site 1 out of 1 in 7l6t

Go back to Chlorine Binding Sites List in 7l6t
Chlorine binding site 1 out of 1 in the Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl7102

b:63.5
occ:1.00
O A:HOH7550 3.0 67.7 1.0
N A:THR6856 3.3 24.9 1.0
OG1 A:THR6856 3.4 27.9 1.0
O A:HOH7582 3.4 66.9 1.0
O A:HOH7271 3.6 39.0 1.0
CA A:LEU6855 3.7 23.7 1.0
O A:HOH7361 3.8 50.0 1.0
CB A:LEU6855 3.8 23.5 1.0
SG A:CYS7007 3.9 32.1 1.0
CD2 A:LEU6855 4.0 24.7 1.0
C A:LEU6855 4.0 25.3 1.0
CG2 A:THR6856 4.0 28.8 1.0
CB A:THR6856 4.1 27.1 1.0
O A:HOH7500 4.1 58.7 1.0
CA A:THR6856 4.3 25.7 1.0
O A:HOH7242 4.3 48.9 1.0
CE3 A:TRP6987 4.4 28.1 1.0
CG A:LEU6855 4.5 23.1 1.0
CB A:CYS7007 4.5 26.5 1.0
CD2 A:TRP6987 4.7 27.6 1.0
CB A:TRP6987 4.8 25.0 1.0
CG A:TRP6987 4.9 27.2 1.0
CZ3 A:TRP6987 4.9 28.3 1.0

Reference:

G.Minasov, L.Shuvalova, M.Rosas-Lemus, O.Kiryukhina, J.S.Brunzelle, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Sars-Cov-2 NSP16/10 Heterodimer in Complex with (M7GPPPA2M)Pupupapapa (Cap-1), S-Adenosyl-L-Homocysteine (Sah) and Two Magnesium (Mg) Ions. To Be Published.
Page generated: Sun Jul 13 03:36:13 2025

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