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Chlorine in PDB 7m3q: Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)

Enzymatic activity of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)

All present enzymatic activity of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv):
2.3.2.26;

Protein crystallography data

The structure of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv), PDB code: 7m3q was solved by A.Chowdhury, A.U.Singer, A.A.Ogunjimi, J.Teyra, W.Zhang, F.Sicheri, S.S.Sidhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.83 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 201.53, 72.068, 48.813, 90, 94.61, 90
R / Rfree (%) 20.3 / 23.5

Other elements in 7m3q:

The structure of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) (pdb code 7m3q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv), PDB code: 7m3q:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 7m3q

Go back to Chlorine Binding Sites List in 7m3q
Chlorine binding site 1 out of 6 in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl805

b:82.4
occ:1.00
 OE1 A:GLN684 2.8 75.4 1.0
OH A:TYR499 3.3 67.6 1.0
CB A:PRO682 3.8 58.8 1.0
CD A:GLN684 3.8 79.0 1.0
NH1 A:ARG439 3.8 56.9 0.5
CE1 A:TYR499 4.0 57.7 1.0
NE2 A:GLN684 4.0 77.4 1.0
CZ A:TYR499 4.1 62.8 1.0
CG A:PRO682 4.6 56.0 1.0
CZ A:ARG439 4.7 54.6 0.5
N A:LEU683 4.8 62.2 1.0
CA A:PRO682 4.8 59.1 1.0
NH2 A:ARG439 4.9 63.1 0.5
CB A:ALA688 5.0 61.4 1.0

Chlorine binding site 2 out of 6 in 7m3q

Go back to Chlorine Binding Sites List in 7m3q
Chlorine binding site 2 out of 6 in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl806

b:69.6
occ:1.00
 ND1 A:HIS496 3.2 49.2 1.0
O A:HOH952 3.2 63.0 1.0
NE2 A:GLN387 3.9 47.4 1.0
CE1 A:HIS496 4.0 45.7 1.0
N A:LEU422 4.0 50.6 1.0
CA A:ARG421 4.1 46.9 1.0
CG A:HIS496 4.2 48.6 1.0
CB A:HIS496 4.4 45.6 1.0
CG A:ARG421 4.4 52.9 1.0
CB A:ARG421 4.6 49.7 1.0
C A:ARG421 4.6 48.8 1.0
OE1 A:GLN387 4.7 54.5 1.0
CD A:GLN387 4.8 52.6 1.0
CA A:HIS496 4.9 47.7 1.0
CB A:LEU422 4.9 44.0 1.0
CG A:LEU422 4.9 47.0 1.0
O A:LYS420 5.0 47.6 1.0

Chlorine binding site 3 out of 6 in 7m3q

Go back to Chlorine Binding Sites List in 7m3q
Chlorine binding site 3 out of 6 in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl807

b:76.6
occ:1.00
 CB A:ARG394 4.0 46.7 1.0
O A:ARG394 4.3 50.0 1.0
C A:ARG394 4.5 47.8 1.0
CB A:GLU396 4.5 45.1 1.0
OE1 A:GLU396 4.7 49.4 1.0
CD A:ARG394 4.7 47.4 1.0
N A:GLU396 4.7 49.5 1.0
CG A:ARG394 4.9 46.1 1.0
N A:ILE395 4.9 49.5 1.0
OE1 A:GLN409 4.9 46.8 1.0
CA A:ARG394 4.9 46.6 1.0

Chlorine binding site 4 out of 6 in 7m3q

Go back to Chlorine Binding Sites List in 7m3q
Chlorine binding site 4 out of 6 in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl808

b:86.9
occ:1.00
 O A:GLY431 3.2 58.2 1.0
O A:HOH948 3.7 61.5 1.0
C A:GLY431 3.9 60.4 1.0
N A:ASP433 4.0 66.6 1.0
CE2 A:TYR434 4.2 56.8 1.0
N A:GLY431 4.3 59.7 1.0
C A:LEU432 4.3 65.1 1.0
CA A:GLY431 4.3 60.3 1.0
CD2 A:TYR434 4.3 53.3 1.0
CZ A:TYR434 4.3 54.7 1.0
CA A:ASP433 4.5 61.0 1.0
N A:TYR434 4.5 57.0 1.0
O A:HOH939 4.5 60.4 1.0
O A:LEU432 4.5 68.4 1.0
C A:ASP433 4.5 62.0 1.0
CG A:GLU430 4.6 56.4 1.0
CE1 A:TYR434 4.7 51.3 1.0
CG A:TYR434 4.7 57.8 1.0
N A:LEU432 4.8 63.2 1.0
CD1 A:TYR434 4.8 51.4 1.0
OH A:TYR434 4.8 50.8 1.0
OE2 A:GLU430 5.0 60.0 1.0
CA A:LEU432 5.0 68.8 1.0

Chlorine binding site 5 out of 6 in 7m3q

Go back to Chlorine Binding Sites List in 7m3q
Chlorine binding site 5 out of 6 in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl809

b:85.2
occ:1.00
 N A:CYS706 3.5 61.1 1.0
ND2 A:ASN709 3.7 67.4 1.0
CB A:ALA705 3.8 61.5 1.0
CB A:CYS706 3.9 68.5 1.0
CA A:ALA705 4.0 63.6 1.0
C A:ALA705 4.3 63.6 1.0
CA A:CYS706 4.4 61.8 1.0
CG A:ASN709 4.6 63.8 1.0
OD1 A:ASN709 4.7 68.1 1.0

Chlorine binding site 6 out of 6 in 7m3q

Go back to Chlorine Binding Sites List in 7m3q
Chlorine binding site 6 out of 6 in the Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl810

b:84.3
occ:1.00
 O A:HOH954 2.6 71.3 1.0
N A:ASN651 3.8 60.6 1.0
ND2 A:ASN651 4.1 63.3 1.0
CB A:SER650 4.1 55.7 1.0
CG A:ASN651 4.2 64.4 1.0
CB A:ASN651 4.3 57.2 1.0
CA A:SER650 4.4 62.5 1.0
C A:SER650 4.7 67.0 1.0
CA A:ASN651 4.7 57.0 1.0
O A:HOH935 4.8 49.8 1.0
OD1 A:ASN651 4.9 71.9 1.0

Reference:

A.Chowdhury, A.U.Singer, A.A.Ogunjimi, J.Teyra, J.Chung, J.L.Wrana, W.Zhang, F.Sicheri, S.S.Sachdev. Structure of the SMURF2 Hect Domain with A High Affinity Ubiquitin Variant (Ubv) To Be Published.
Page generated: Tue Jul 30 00:25:17 2024

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