Chlorine in PDB 7mc5: Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex, PDB code: 7mc5 was solved by N.M.Moeller, K.Shi, S.Banerjee, L.Yin, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.70 / 1.64
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.735, 67.48, 111.249, 90, 90, 90
R / Rfree (%) 16.6 / 19.7

Other elements in 7mc5:

The structure of Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex (pdb code 7mc5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex, PDB code: 7mc5:

Chlorine binding site 1 out of 1 in 7mc5

Go back to Chlorine Binding Sites List in 7mc5
Chlorine binding site 1 out of 1 in the Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sars-Cov-2 Exon-NSP10 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl320

b:68.0
occ:1.00
OE1 A:GLU204 3.3 34.3 1.0
CD A:GLU204 3.7 28.2 1.0
CG A:GLU204 4.0 25.2 1.0
CZ A:PHE240 4.0 19.1 1.0
O A:HOH631 4.2 37.7 1.0
O A:HOH413 4.2 31.9 1.0
NH1 A:ARG180 4.2 28.6 1.0
OE2 A:GLU204 4.4 24.8 1.0
CB A:PRO70 4.4 22.8 1.0
CE1 A:PHE240 4.6 24.1 1.0
NH2 A:ARG180 4.7 28.2 1.0
NE A:ARG213 4.8 21.9 1.0
CZ A:ARG180 4.9 28.3 1.0
O A:HOH708 4.9 38.8 1.0

Reference:

N.H.Moeller, K.Shi, O.Demir, S.Banerjee, L.Yin, C.Belica, C.Durfee, R.E.Amaro, H.Aihara. Structure and Dynamics of Sars-Cov-2 Proofreading Exoribonuclease Exon. Biorxiv 2021.
PubMed: 33821277
DOI: 10.1101/2021.04.02.438274
Page generated: Tue Jul 30 00:27:42 2024

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