Chlorine in PDB 7nin: X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
Protein crystallography data
The structure of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak, PDB code: 7nin
was solved by
K.E.H.Frandsen,
R.Tokin,
L.Skov,
K.S.Johansen,
L.Lo Leggio,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.25 /
1.40
|
Space group
|
P 41 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
125.04,
125.04,
125.04,
90,
90,
90
|
R / Rfree (%)
|
17.4 /
19.2
|
Other elements in 7nin:
The structure of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
(pdb code 7nin). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak, PDB code: 7nin:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 7nin
Go back to
Chlorine Binding Sites List in 7nin
Chlorine binding site 1 out
of 6 in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:33.2
occ:0.65
|
N
|
A:ASP176
|
2.0
|
27.3
|
0.2
|
CB
|
A:ASP176
|
2.8
|
29.3
|
0.2
|
CA
|
A:ASP176
|
2.9
|
25.9
|
0.2
|
C
|
A:SER175
|
2.9
|
22.1
|
0.2
|
O
|
A:HOH541
|
3.1
|
35.7
|
1.0
|
N
|
A:ASP176
|
3.2
|
23.6
|
0.8
|
ND1
|
A:HIS131
|
3.2
|
48.0
|
1.0
|
CA
|
A:SER175
|
3.4
|
22.6
|
0.2
|
CG
|
A:ASP176
|
3.5
|
32.9
|
0.8
|
OD1
|
A:ASP176
|
3.6
|
29.8
|
0.8
|
CG
|
A:ASP176
|
3.6
|
27.4
|
0.2
|
CA
|
A:SER175
|
3.6
|
25.3
|
0.8
|
OD2
|
A:ASP176
|
3.7
|
30.6
|
0.8
|
CE1
|
A:HIS131
|
3.7
|
40.1
|
1.0
|
C
|
A:SER175
|
3.9
|
26.5
|
0.8
|
O
|
A:SER175
|
3.9
|
27.3
|
0.2
|
CB
|
A:ASP176
|
3.9
|
28.3
|
0.8
|
CB
|
A:ALA56
|
3.9
|
26.3
|
1.0
|
OD1
|
A:ASP176
|
4.1
|
22.7
|
0.2
|
CA
|
A:ASP176
|
4.1
|
28.6
|
0.8
|
C
|
A:ASP176
|
4.2
|
27.9
|
0.2
|
OD2
|
A:ASP176
|
4.2
|
29.4
|
0.2
|
OG
|
A:SER175
|
4.3
|
20.6
|
0.2
|
OG
|
A:SER175
|
4.3
|
23.2
|
0.8
|
CG
|
A:HIS131
|
4.4
|
34.6
|
1.0
|
N
|
A:SER175
|
4.4
|
21.1
|
0.2
|
CB
|
A:SER175
|
4.4
|
21.5
|
0.2
|
CB
|
A:SER175
|
4.5
|
22.1
|
0.8
|
N
|
A:SER175
|
4.5
|
23.5
|
0.8
|
O
|
A:HOH543
|
4.5
|
27.5
|
1.0
|
N
|
A:ASP177
|
4.6
|
16.0
|
0.2
|
O
|
A:SER174
|
4.8
|
25.6
|
0.5
|
O
|
A:SER174
|
4.8
|
22.6
|
0.5
|
CB
|
A:HIS131
|
4.8
|
29.4
|
1.0
|
O
|
A:HOH702
|
4.9
|
35.5
|
1.0
|
C
|
A:SER174
|
4.9
|
23.9
|
0.5
|
C
|
A:SER174
|
4.9
|
24.4
|
0.5
|
O
|
A:HOH651
|
5.0
|
41.3
|
1.0
|
NE2
|
A:HIS131
|
5.0
|
44.0
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 7nin
Go back to
Chlorine Binding Sites List in 7nin
Chlorine binding site 2 out
of 6 in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:68.6
occ:0.33
|
CBY
|
A:UFK309
|
4.2
|
30.3
|
0.9
|
CBZ
|
A:UFK309
|
4.2
|
28.8
|
0.9
|
OCC
|
A:UFK309
|
4.3
|
33.2
|
0.9
|
OCD
|
A:UFK309
|
4.4
|
32.3
|
0.9
|
CCA
|
A:UFK309
|
4.6
|
30.4
|
0.9
|
CBX
|
A:UFK309
|
4.7
|
27.8
|
0.9
|
CCB
|
A:UFK309
|
4.9
|
28.8
|
0.9
|
|
Chlorine binding site 3 out
of 6 in 7nin
Go back to
Chlorine Binding Sites List in 7nin
Chlorine binding site 3 out
of 6 in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl305
b:30.0
occ:0.90
|
O
|
A:HOH552
|
3.1
|
40.4
|
1.0
|
N
|
A:GLN228
|
3.2
|
23.6
|
1.0
|
O
|
A:HOH564
|
3.5
|
34.8
|
1.0
|
O
|
A:HOH443
|
3.6
|
39.0
|
1.0
|
CA
|
A:ALA121
|
3.7
|
23.2
|
1.0
|
CA
|
A:ALA227
|
3.8
|
24.5
|
1.0
|
CB
|
A:ALA121
|
3.9
|
23.9
|
1.0
|
CB
|
A:GLN228
|
3.9
|
23.0
|
1.0
|
C
|
A:ALA227
|
4.0
|
22.6
|
1.0
|
O
|
A:THR120
|
4.1
|
25.8
|
1.0
|
CA
|
A:GLN228
|
4.2
|
22.7
|
1.0
|
N
|
A:ALA121
|
4.2
|
24.8
|
1.0
|
C
|
A:THR120
|
4.4
|
25.4
|
1.0
|
CB
|
A:ALA227
|
4.4
|
25.3
|
1.0
|
CG2
|
A:THR120
|
4.6
|
31.4
|
1.0
|
O
|
A:HOH727
|
4.8
|
53.4
|
1.0
|
C
|
A:ALA121
|
4.8
|
22.6
|
1.0
|
N
|
A:ALA227
|
4.9
|
23.7
|
1.0
|
O
|
A:GLN228
|
4.9
|
26.3
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 7nin
Go back to
Chlorine Binding Sites List in 7nin
Chlorine binding site 4 out
of 6 in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl306
b:27.0
occ:0.90
|
O
|
A:HOH527
|
2.9
|
43.2
|
1.0
|
O
|
A:HOH430
|
3.0
|
41.0
|
1.0
|
N
|
A:LYS32
|
3.1
|
18.8
|
1.0
|
N
|
A:ASN33
|
3.3
|
18.6
|
1.0
|
O
|
A:HOH714
|
3.3
|
44.7
|
1.0
|
CB
|
A:ASN33
|
3.7
|
19.0
|
1.0
|
CA
|
A:LYS32
|
3.9
|
19.4
|
1.0
|
CA
|
A:VAL31
|
4.0
|
18.1
|
1.0
|
C
|
A:VAL31
|
4.0
|
18.4
|
1.0
|
C
|
A:LYS32
|
4.1
|
19.2
|
1.0
|
CG1
|
A:VAL31
|
4.1
|
19.9
|
1.0
|
CA
|
A:ASN33
|
4.1
|
19.7
|
1.0
|
CB
|
A:LYS32
|
4.3
|
20.6
|
1.0
|
O
|
A:HOH553
|
4.4
|
36.2
|
1.0
|
CB
|
A:VAL31
|
4.6
|
19.4
|
1.0
|
OH
|
A:TYR153
|
4.6
|
24.5
|
1.0
|
O
|
A:HOH434
|
4.6
|
44.9
|
1.0
|
O
|
A:PRO30
|
4.7
|
18.3
|
1.0
|
CZ
|
A:TYR153
|
4.7
|
21.6
|
1.0
|
O
|
A:HOH519
|
4.7
|
25.5
|
1.0
|
CG
|
A:LYS32
|
5.0
|
21.1
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 7nin
Go back to
Chlorine Binding Sites List in 7nin
Chlorine binding site 5 out
of 6 in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl307
b:31.2
occ:1.00
|
O
|
A:HOH548
|
3.0
|
20.6
|
1.0
|
OG
|
A:SER225
|
3.0
|
33.0
|
1.0
|
CA
|
A:GLY224
|
3.5
|
27.6
|
1.0
|
N
|
A:SER225
|
3.6
|
23.8
|
1.0
|
C
|
A:GLY224
|
3.6
|
25.3
|
1.0
|
CB
|
A:SER126
|
3.8
|
21.1
|
1.0
|
CB
|
A:SER225
|
3.8
|
27.2
|
1.0
|
N
|
A:GLY224
|
4.1
|
25.4
|
1.0
|
O
|
A:SER126
|
4.3
|
21.0
|
1.0
|
O
|
A:GLY224
|
4.3
|
30.5
|
1.0
|
CA
|
A:SER225
|
4.3
|
24.7
|
1.0
|
C
|
A:SER126
|
4.4
|
19.7
|
1.0
|
CG2
|
A:THR59
|
4.4
|
22.4
|
1.0
|
CG2
|
A:VAL128
|
4.4
|
20.8
|
1.0
|
OG
|
A:SER126
|
4.6
|
22.5
|
1.0
|
CA
|
A:SER126
|
4.6
|
19.3
|
1.0
|
C
|
A:GLY223
|
4.7
|
28.7
|
1.0
|
N
|
A:VAL127
|
4.8
|
20.2
|
1.0
|
O
|
A:HOH439
|
4.9
|
26.6
|
1.0
|
C
|
A:VAL127
|
4.9
|
21.3
|
1.0
|
O
|
A:SER225
|
4.9
|
28.0
|
1.0
|
CA
|
A:VAL127
|
5.0
|
21.7
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 7nin
Go back to
Chlorine Binding Sites List in 7nin
Chlorine binding site 6 out
of 6 in the X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl308
b:52.7
occ:1.00
|
N
|
A:SER219
|
3.3
|
33.7
|
1.0
|
OG
|
A:SER219
|
3.6
|
38.7
|
1.0
|
CD1
|
A:TRP218
|
3.6
|
30.1
|
1.0
|
CA
|
A:TRP218
|
3.7
|
30.1
|
1.0
|
O
|
A:HOH699
|
3.8
|
42.8
|
1.0
|
C
|
A:TRP218
|
4.0
|
32.1
|
1.0
|
CB
|
A:SER219
|
4.1
|
37.0
|
1.0
|
CA
|
A:SER219
|
4.3
|
37.5
|
1.0
|
O
|
A:VAL217
|
4.4
|
32.5
|
1.0
|
CG
|
A:TRP218
|
4.5
|
32.5
|
1.0
|
CB
|
A:TRP218
|
4.6
|
29.2
|
1.0
|
NE1
|
A:TRP218
|
4.7
|
33.5
|
1.0
|
N
|
A:TRP218
|
4.7
|
30.0
|
1.0
|
O
|
A:HOH554
|
4.8
|
35.0
|
0.7
|
C
|
A:VAL217
|
4.9
|
30.8
|
1.0
|
|
Reference:
R.Tokin,
K.E.H.Frandsen,
J.Ipsen,
L.Lo Leggio,
M.M.Poojary,
J.-G.Berrin,
S.Grisel,
S.Brander,
P.-E.Jensen,
K.S.Johansen.
X-Ray Crystal Structure of LSAA9A - CINNAMTANNINB1 Soak To Be Published.
Page generated: Tue Jul 30 00:55:25 2024
|