Chlorine in PDB 7nq6: High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98

Protein crystallography data

The structure of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98, PDB code: 7nq6 was solved by S.Trakhanov, D.Goerlich, T.Huyton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.56 / 1.50
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.07, 72.07, 91.82, 90, 90, 90
R / Rfree (%) 17.1 / 19.2

Other elements in 7nq6:

The structure of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 (pdb code 7nq6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98, PDB code: 7nq6:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7nq6

Go back to Chlorine Binding Sites List in 7nq6
Chlorine binding site 1 out of 3 in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:40.0
occ:0.90
H A:MET822 2.2 33.4 1.0
HA A:CYS821 3.0 32.1 1.0
N A:MET822 3.0 27.8 1.0
HB3 A:CYS821 3.1 37.5 1.0
HG3 A:MET822 3.2 35.9 1.0
HB2 A:MET822 3.2 33.0 1.0
HE1 A:MET822 3.3 35.6 1.0
O A:HOH1024 3.4 51.9 1.0
CA A:CYS821 3.6 26.8 1.0
CB A:CYS821 3.7 31.2 1.0
C A:CYS821 3.8 28.4 1.0
CB A:MET822 3.8 27.5 1.0
CG A:MET822 3.9 29.9 1.0
CA A:MET822 4.0 25.5 1.0
CE A:MET822 4.1 29.6 1.0
HE2 A:MET822 4.3 35.6 1.0
SG A:CYS821 4.4 36.3 1.0
HB2 A:CYS821 4.6 37.5 1.0
HG2 A:MET822 4.7 35.9 1.0
HG A:CYS821 4.7 43.6 1.0
O A:MET822 4.7 28.6 1.0
HA A:MET822 4.7 30.6 1.0
HB3 A:MET822 4.7 33.0 1.0
HE3 A:MET822 4.8 35.6 1.0
O A:ARG820 4.9 30.1 1.0
C A:MET822 4.9 25.6 1.0
SD A:MET822 4.9 30.9 1.0
N A:CYS821 4.9 28.0 1.0

Chlorine binding site 2 out of 3 in 7nq6

Go back to Chlorine Binding Sites List in 7nq6
Chlorine binding site 2 out of 3 in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl906

b:28.0
occ:0.54
O A:HOH1066 2.8 20.2 1.0
O A:HOH1078 2.9 17.7 1.0
O A:HOH1165 2.9 38.9 1.0
HG1 A:THR808 3.3 20.5 1.0
HG A:SER760 3.9 24.0 1.0
O A:HOH1208 3.9 36.2 1.0
HH22 A:ARG853 4.0 24.2 1.0
OG A:SER760 4.0 20.0 1.0
OG1 A:THR808 4.2 17.0 1.0
O A:HOH1075 4.2 23.8 1.0
HG21 A:THR808 4.2 22.9 1.0
O A:HOH1187 4.4 52.3 1.0
NA A:NA903 4.4 23.6 1.0
HB A:THR808 4.5 20.5 1.0
O A:HOH1074 4.6 48.6 1.0
HE21 A:GLN806 4.6 22.2 1.0
HH12 A:ARG853 4.6 21.4 1.0
HE22 A:GLN806 4.7 22.2 1.0
NH2 A:ARG853 4.7 20.2 1.0
CB A:THR808 4.8 17.1 1.0
O A:HOH1117 4.8 32.5 1.0
CG2 A:THR808 5.0 19.1 1.0

Chlorine binding site 3 out of 3 in 7nq6

Go back to Chlorine Binding Sites List in 7nq6
Chlorine binding site 3 out of 3 in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:41.4
occ:0.66
H A:ASN771 2.1 32.1 1.0
O A:HOH1069 2.8 40.0 1.0
HA A:THR770 2.8 27.1 1.0
O A:HOH1148 2.8 37.5 1.0
N A:ASN771 3.0 26.7 1.0
HG13 A:ILE720 3.0 34.3 1.0
OD1 A:ASN771 3.4 35.0 1.0
HA2 A:GLY719 3.4 68.3 1.0
HB2 A:CYS746 3.4 28.4 1.0
HA A:ASN771 3.5 32.5 1.0
HB3 A:CYS746 3.5 28.4 1.0
HG22 A:THR770 3.6 29.3 1.0
CA A:THR770 3.6 22.6 1.0
H A:ILE720 3.7 36.8 1.0
H A:GLY719 3.7 92.1 1.0
C A:THR770 3.8 24.5 1.0
CA A:ASN771 3.8 27.1 1.0
CG1 A:ILE720 3.9 28.6 1.0
CB A:CYS746 3.9 23.7 1.0
HG22 A:VAL740 4.0 46.8 1.0
N A:ILE720 4.0 30.7 1.0
HD13 A:ILE720 4.0 36.4 1.0
CA A:GLY719 4.0 56.9 1.0
HG12 A:ILE720 4.1 34.3 1.0
C A:GLY719 4.1 40.6 1.0
CG A:ASN771 4.2 41.2 1.0
N A:GLY719 4.2 76.7 1.0
CG2 A:THR770 4.2 24.4 1.0
HG21 A:THR770 4.3 29.3 1.0
O A:LEU769 4.3 21.3 1.0
HG21 A:VAL740 4.4 46.8 1.0
CD1 A:ILE720 4.4 30.3 1.0
CB A:THR770 4.5 24.1 1.0
H A:CYS746 4.5 28.8 1.0
HG A:CYS746 4.6 32.2 1.0
CB A:ASN771 4.6 29.7 1.0
CG2 A:VAL740 4.6 39.0 1.0
N A:THR770 4.6 22.4 1.0
HD11 A:ILE720 4.7 36.4 1.0
H A:LEU772 4.8 27.2 1.0
C A:LEU769 4.8 22.6 1.0
CA A:ILE720 4.9 27.1 1.0
HA A:ILE720 4.9 32.5 1.0
O A:GLY719 4.9 33.5 1.0
N A:CYS746 4.9 24.0 1.0
HA3 A:GLY719 4.9 68.3 1.0
CB A:ILE720 5.0 25.7 1.0
O A:HOH1017 5.0 38.1 1.0
SG A:CYS746 5.0 26.9 1.0

Reference:

S.Trakhanov, T.Huyton, D.Goerlich. High Resolution Crystal Structure of C-Terminal Domain (Residues 715-866) of Nucleoporin-98 To Be Published.
Page generated: Sat Apr 17 15:14:54 2021

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