Chlorine in PDB 7nq6: High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98
Protein crystallography data
The structure of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98, PDB code: 7nq6
was solved by
S.Trakhanov,
D.Goerlich,
T.Huyton,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.56 /
1.50
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
72.07,
72.07,
91.82,
90,
90,
90
|
R / Rfree (%)
|
17.1 /
19.2
|
Other elements in 7nq6:
The structure of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98
(pdb code 7nq6). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98, PDB code: 7nq6:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 7nq6
Go back to
Chlorine Binding Sites List in 7nq6
Chlorine binding site 1 out
of 3 in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl905
b:40.0
occ:0.90
|
H
|
A:MET822
|
2.2
|
33.4
|
1.0
|
HA
|
A:CYS821
|
3.0
|
32.1
|
1.0
|
N
|
A:MET822
|
3.0
|
27.8
|
1.0
|
HB3
|
A:CYS821
|
3.1
|
37.5
|
1.0
|
HG3
|
A:MET822
|
3.2
|
35.9
|
1.0
|
HB2
|
A:MET822
|
3.2
|
33.0
|
1.0
|
HE1
|
A:MET822
|
3.3
|
35.6
|
1.0
|
O
|
A:HOH1024
|
3.4
|
51.9
|
1.0
|
CA
|
A:CYS821
|
3.6
|
26.8
|
1.0
|
CB
|
A:CYS821
|
3.7
|
31.2
|
1.0
|
C
|
A:CYS821
|
3.8
|
28.4
|
1.0
|
CB
|
A:MET822
|
3.8
|
27.5
|
1.0
|
CG
|
A:MET822
|
3.9
|
29.9
|
1.0
|
CA
|
A:MET822
|
4.0
|
25.5
|
1.0
|
CE
|
A:MET822
|
4.1
|
29.6
|
1.0
|
HE2
|
A:MET822
|
4.3
|
35.6
|
1.0
|
SG
|
A:CYS821
|
4.4
|
36.3
|
1.0
|
HB2
|
A:CYS821
|
4.6
|
37.5
|
1.0
|
HG2
|
A:MET822
|
4.7
|
35.9
|
1.0
|
HG
|
A:CYS821
|
4.7
|
43.6
|
1.0
|
O
|
A:MET822
|
4.7
|
28.6
|
1.0
|
HA
|
A:MET822
|
4.7
|
30.6
|
1.0
|
HB3
|
A:MET822
|
4.7
|
33.0
|
1.0
|
HE3
|
A:MET822
|
4.8
|
35.6
|
1.0
|
O
|
A:ARG820
|
4.9
|
30.1
|
1.0
|
C
|
A:MET822
|
4.9
|
25.6
|
1.0
|
SD
|
A:MET822
|
4.9
|
30.9
|
1.0
|
N
|
A:CYS821
|
4.9
|
28.0
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 7nq6
Go back to
Chlorine Binding Sites List in 7nq6
Chlorine binding site 2 out
of 3 in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl906
b:28.0
occ:0.54
|
O
|
A:HOH1066
|
2.8
|
20.2
|
1.0
|
O
|
A:HOH1078
|
2.9
|
17.7
|
1.0
|
O
|
A:HOH1165
|
2.9
|
38.9
|
1.0
|
HG1
|
A:THR808
|
3.3
|
20.5
|
1.0
|
HG
|
A:SER760
|
3.9
|
24.0
|
1.0
|
O
|
A:HOH1208
|
3.9
|
36.2
|
1.0
|
HH22
|
A:ARG853
|
4.0
|
24.2
|
1.0
|
OG
|
A:SER760
|
4.0
|
20.0
|
1.0
|
OG1
|
A:THR808
|
4.2
|
17.0
|
1.0
|
O
|
A:HOH1075
|
4.2
|
23.8
|
1.0
|
HG21
|
A:THR808
|
4.2
|
22.9
|
1.0
|
O
|
A:HOH1187
|
4.4
|
52.3
|
1.0
|
NA
|
A:NA903
|
4.4
|
23.6
|
1.0
|
HB
|
A:THR808
|
4.5
|
20.5
|
1.0
|
O
|
A:HOH1074
|
4.6
|
48.6
|
1.0
|
HE21
|
A:GLN806
|
4.6
|
22.2
|
1.0
|
HH12
|
A:ARG853
|
4.6
|
21.4
|
1.0
|
HE22
|
A:GLN806
|
4.7
|
22.2
|
1.0
|
NH2
|
A:ARG853
|
4.7
|
20.2
|
1.0
|
CB
|
A:THR808
|
4.8
|
17.1
|
1.0
|
O
|
A:HOH1117
|
4.8
|
32.5
|
1.0
|
CG2
|
A:THR808
|
5.0
|
19.1
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 7nq6
Go back to
Chlorine Binding Sites List in 7nq6
Chlorine binding site 3 out
of 3 in the High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl907
b:41.4
occ:0.66
|
H
|
A:ASN771
|
2.1
|
32.1
|
1.0
|
O
|
A:HOH1069
|
2.8
|
40.0
|
1.0
|
HA
|
A:THR770
|
2.8
|
27.1
|
1.0
|
O
|
A:HOH1148
|
2.8
|
37.5
|
1.0
|
N
|
A:ASN771
|
3.0
|
26.7
|
1.0
|
HG13
|
A:ILE720
|
3.0
|
34.3
|
1.0
|
OD1
|
A:ASN771
|
3.4
|
35.0
|
1.0
|
HA2
|
A:GLY719
|
3.4
|
68.3
|
1.0
|
HB2
|
A:CYS746
|
3.4
|
28.4
|
1.0
|
HA
|
A:ASN771
|
3.5
|
32.5
|
1.0
|
HB3
|
A:CYS746
|
3.5
|
28.4
|
1.0
|
HG22
|
A:THR770
|
3.6
|
29.3
|
1.0
|
CA
|
A:THR770
|
3.6
|
22.6
|
1.0
|
H
|
A:ILE720
|
3.7
|
36.8
|
1.0
|
H
|
A:GLY719
|
3.7
|
92.1
|
1.0
|
C
|
A:THR770
|
3.8
|
24.5
|
1.0
|
CA
|
A:ASN771
|
3.8
|
27.1
|
1.0
|
CG1
|
A:ILE720
|
3.9
|
28.6
|
1.0
|
CB
|
A:CYS746
|
3.9
|
23.7
|
1.0
|
HG22
|
A:VAL740
|
4.0
|
46.8
|
1.0
|
N
|
A:ILE720
|
4.0
|
30.7
|
1.0
|
HD13
|
A:ILE720
|
4.0
|
36.4
|
1.0
|
CA
|
A:GLY719
|
4.0
|
56.9
|
1.0
|
HG12
|
A:ILE720
|
4.1
|
34.3
|
1.0
|
C
|
A:GLY719
|
4.1
|
40.6
|
1.0
|
CG
|
A:ASN771
|
4.2
|
41.2
|
1.0
|
N
|
A:GLY719
|
4.2
|
76.7
|
1.0
|
CG2
|
A:THR770
|
4.2
|
24.4
|
1.0
|
HG21
|
A:THR770
|
4.3
|
29.3
|
1.0
|
O
|
A:LEU769
|
4.3
|
21.3
|
1.0
|
HG21
|
A:VAL740
|
4.4
|
46.8
|
1.0
|
CD1
|
A:ILE720
|
4.4
|
30.3
|
1.0
|
CB
|
A:THR770
|
4.5
|
24.1
|
1.0
|
H
|
A:CYS746
|
4.5
|
28.8
|
1.0
|
HG
|
A:CYS746
|
4.6
|
32.2
|
1.0
|
CB
|
A:ASN771
|
4.6
|
29.7
|
1.0
|
CG2
|
A:VAL740
|
4.6
|
39.0
|
1.0
|
N
|
A:THR770
|
4.6
|
22.4
|
1.0
|
HD11
|
A:ILE720
|
4.7
|
36.4
|
1.0
|
H
|
A:LEU772
|
4.8
|
27.2
|
1.0
|
C
|
A:LEU769
|
4.8
|
22.6
|
1.0
|
CA
|
A:ILE720
|
4.9
|
27.1
|
1.0
|
HA
|
A:ILE720
|
4.9
|
32.5
|
1.0
|
O
|
A:GLY719
|
4.9
|
33.5
|
1.0
|
N
|
A:CYS746
|
4.9
|
24.0
|
1.0
|
HA3
|
A:GLY719
|
4.9
|
68.3
|
1.0
|
CB
|
A:ILE720
|
5.0
|
25.7
|
1.0
|
O
|
A:HOH1017
|
5.0
|
38.1
|
1.0
|
SG
|
A:CYS746
|
5.0
|
26.9
|
1.0
|
|
Reference:
S.Trakhanov,
T.Huyton,
D.Goerlich.
High Resolution Crystal Structure of C-Terminal Domain (Residues 715-866) of Nucleoporin-98 To Be Published.
Page generated: Tue Jul 30 01:04:46 2024
|