Atomistry » Chlorine » PDB 7nr3-7o04 » 7nys
Atomistry »
  Chlorine »
    PDB 7nr3-7o04 »
      7nys »

Chlorine in PDB 7nys: Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A

Enzymatic activity of Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A

All present enzymatic activity of Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A:
2.3.1.169;

Protein crystallography data

The structure of Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A, PDB code: 7nys was solved by J.Kreibich, J.H.Jeoung, H.Dobbek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.56 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.276, 99.2, 238.584, 90, 90, 90
R / Rfree (%) 18.4 / 22.1

Other elements in 7nys:

The structure of Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A also contains other interesting chemical elements:

Titanium (Ti) 1 atom
Nickel (Ni) 4 atoms
Iron (Fe) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A (pdb code 7nys). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A, PDB code: 7nys:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7nys

Go back to Chlorine Binding Sites List in 7nys
Chlorine binding site 1 out of 2 in the Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl804

b:55.0
occ:1.00
HG A:SER44 3.2 53.2 1.0
HA A:ILE41 3.8 31.9 1.0
HG2 A:GLU40 3.9 57.7 1.0
OG A:SER44 4.0 44.4 1.0
OE1 A:GLU40 4.0 75.8 1.0
HZ B:PHE215 4.0 23.3 1.0
HD12 A:ILE41 4.1 54.4 1.0
HB3 A:SER44 4.2 53.3 1.0
CZ B:PHE215 4.2 19.4 1.0
OH B:TYR38 4.2 27.1 1.0
CZ B:TYR38 4.4 23.7 1.0
HG13 A:ILE41 4.4 45.4 1.0
CE2 B:PHE215 4.5 25.8 1.0
HH B:TYR38 4.5 32.6 1.0
HE2 B:PHE215 4.5 30.9 1.0
CB A:SER44 4.5 44.4 1.0
CD A:GLU40 4.5 66.5 1.0
HB2 A:SER44 4.5 53.3 1.0
HE2 B:TYR38 4.6 30.1 1.0
CE2 B:TYR38 4.6 25.1 1.0
CG A:GLU40 4.6 48.1 1.0
HB A:ILE41 4.7 36.6 1.0
CA A:ILE41 4.7 26.6 1.0
CE1 B:PHE215 4.7 25.9 1.0
CD1 A:ILE41 4.8 45.4 1.0
HD11 A:ILE41 4.8 54.4 1.0
O B:HOH1392 4.9 33.4 1.0
HE1 B:PHE215 4.9 31.1 1.0
CG1 A:ILE41 4.9 37.9 1.0
CE1 B:TYR38 4.9 21.4 1.0
O A:GLU40 5.0 24.9 1.0

Chlorine binding site 2 out of 2 in 7nys

Go back to Chlorine Binding Sites List in 7nys
Chlorine binding site 2 out of 2 in the Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Monomeric Acetyl-Coa Synthase in Closed Conformation with Carbon Monoxide Bound to the Ni Proximal of Cluster A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl805

b:53.7
occ:1.00
HB3 A:ASP81 3.3 41.7 1.0
H A:GLU75 3.3 45.1 1.0
HB3 A:GLU74 3.3 36.6 1.0
O A:GLU75 3.4 37.7 1.0
O A:HOH1165 3.5 31.8 1.0
C A:GLU75 3.8 38.2 1.0
N A:GLU75 3.8 37.6 1.0
CG A:ASP81 3.9 33.2 1.0
HA A:VAL76 3.9 36.5 1.0
OD1 A:ASP81 4.0 37.1 1.0
CB A:ASP81 4.0 34.8 1.0
O A:HOH1208 4.2 35.6 1.0
OD2 A:ASP81 4.2 29.4 1.0
CB A:GLU74 4.2 30.5 1.0
HB2 A:GLU75 4.3 50.8 1.0
CA A:GLU75 4.3 34.3 1.0
HA A:GLU74 4.3 33.3 1.0
HG2 A:GLU74 4.4 27.0 1.0
N A:VAL76 4.4 28.5 1.0
C A:GLU74 4.6 33.3 1.0
HA A:ASP81 4.6 45.1 1.0
CA A:GLU74 4.6 27.8 1.0
CA A:VAL76 4.7 30.4 1.0
HG22 A:VAL76 4.7 37.0 1.0
HB2 A:ASP81 4.7 41.7 1.0
CB A:GLU75 4.7 42.4 1.0
CG A:GLU74 4.8 22.5 1.0
HD11 A:ILE85 4.8 35.1 1.0
HG3 A:GLU74 4.9 27.0 1.0
HB3 A:GLU75 4.9 50.8 1.0
O A:HOH1040 4.9 41.5 1.0
HB2 A:GLU74 4.9 36.6 1.0
CA A:ASP81 4.9 37.6 1.0
H A:VAL76 5.0 34.1 1.0

Reference:

J.Kreibich, J.H.Jeoung, H.Dobbek. Ligand Binding at the Ni,Ni-[4FE-4S] Cluster of Acetyl-Coa Synthase To Be Published.
Page generated: Tue Jul 30 01:10:46 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy