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Chlorine in PDB 7omd: Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A

Enzymatic activity of Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A

All present enzymatic activity of Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A:
1.13.12.5;

Protein crystallography data

The structure of Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A, PDB code: 7omd was solved by A.Schenkmayerova, Y.L.Janin, M.Marek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.40 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.569, 84.057, 77.437, 90, 90.72, 90
R / Rfree (%) 17.6 / 21.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A (pdb code 7omd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A, PDB code: 7omd:

Chlorine binding site 1 out of 1 in 7omd

Go back to Chlorine Binding Sites List in 7omd
Chlorine binding site 1 out of 1 in the Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Azacoelenterazine-Bound Renilla Reniformis Luciferase Variant RLUC8-D162A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:24.3
occ:1.00
 O28 B:VK8402 2.9 23.7 1.0
O B:HOH556 3.1 22.7 1.0
ND2 B:ASN53 3.2 17.6 1.0
CB B:ASN53 3.5 16.4 1.0
NE1 B:TRP121 3.6 23.3 1.0
C29 B:VK8402 3.7 25.3 1.0
C27 B:VK8402 3.7 24.2 1.0
CD1 B:TRP121 3.8 19.4 1.0
CG B:ASN53 3.9 15.7 1.0
CE1 B:PHE181 3.9 23.8 1.0
CD B:PRO220 4.0 20.1 1.0
C21 B:VK8403 4.1 27.1 1.0
N B:PRO220 4.1 19.3 1.0
C29 B:VK8401 4.1 18.9 1.0
CB B:TRP219 4.3 20.2 1.0
CB B:PRO220 4.3 22.8 1.0
CA B:PRO220 4.3 21.6 1.0
C20 B:VK8403 4.4 27.6 1.0
CZ B:PHE181 4.4 24.9 1.0
OD1 B:ASP120 4.5 17.6 1.0
C B:TRP219 4.6 22.0 1.0
CG B:PRO220 4.7 19.7 1.0
CD1 B:PHE181 4.7 18.5 1.0
C30 B:VK8401 4.9 22.6 1.0
OD2 B:ASP120 4.9 27.4 1.0
CE2 B:TRP121 4.9 18.4 1.0
O28 B:VK8401 5.0 22.6 1.0
C30 B:VK8402 5.0 25.3 1.0

Reference:

A.Schenkmayerova, M.Marek, Y.Janin. Structural and Chemical Basis of the Renilla-Type Bioluminescence To Be Published.
Page generated: Sun Jul 13 05:17:26 2025

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