Chlorine in PDB 7ood: Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells

The structure of Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells also contains other interesting chemical elements:

Zinc	(Zn)	3 atoms
Magnesium	(Mg)	25 atoms
Potassium	(K)	1 atom

The binding sites of Chlorine atom in the Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells (pdb code 7ood). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells, PDB code: 7ood:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells within 5.0Å range: probe atom residue distance (Å) B Occ 3:Cl3026 b:54.1 occ:1.00 CL1 3:CLM3026 0.0 54.1 1.0 C1 3:CLM3026 1.8 54.1 1.0 C2 3:CLM3026 2.8 54.1 1.0 CL2 3:CLM3026 2.9 54.1 1.0 O2 3:CLM3026 2.9 54.1 1.0 N2 3:CLM3026 4.1 54.1 1.0 O4' 3:G2513 4.8 53.0 1.0 C1' 3:G2513 4.9 53.0 1.0

Chlorine binding site 2 out of 2 in the Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mycoplasma Pneumoniae 50S Subunit of Ribosomes in Chloramphenicol- Treated Cells within 5.0Å range: probe atom residue distance (Å) B Occ 3:Cl3026 b:54.1 occ:1.00 CL2 3:CLM3026 0.0 54.1 1.0 C1 3:CLM3026 1.8 54.1 1.0 C2 3:CLM3026 2.7 54.1 1.0 CL1 3:CLM3026 2.9 54.1 1.0 O2 3:CLM3026 3.3 54.1 1.0 O4' 3:G2513 3.4 53.0 1.0 N2 3:CLM3026 3.6 54.1 1.0 O5' 3:G2513 4.0 53.0 1.0 C1' 3:G2513 4.1 53.0 1.0 OP1 3:G2513 4.1 53.0 1.0 N9 3:G2513 4.2 53.0 1.0 O4 3:CLM3026 4.3 54.1 1.0 OP2 3:G2513 4.4 53.0 1.0 P 3:G2513 4.4 53.0 1.0 C8 3:G2513 4.4 53.0 1.0 C4' 3:G2513 4.6 53.0 1.0 C3 3:CLM3026 4.8 54.1 1.0 C5' 3:G2513 4.8 53.0 1.0 C4 3:G2513 4.8 53.0 1.0 C4 3:CLM3026 4.8 54.1 1.0 O2' 3:A2511 4.9 51.8 1.0

L.Xue, S.Lenz, M.Zimmermann-Kogadeeva, D.Tegunov, P.Cramer, P.Bork, J.Rappsilber, J.Mahamid. Visualizing Translation Dynamics at Atomic Detail Inside A Bacterial Cell. Nature V. 610 205 2022.
ISSN: ESSN 1476-4687
PubMed: 36171285
DOI: 10.1038/S41586-022-05255-2