Chlorine in PDB 7qh0: Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation

Enzymatic activity of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation

All present enzymatic activity of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation:
5.3.1.1;

Protein crystallography data

The structure of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation, PDB code: 7qh0 was solved by G.Cordara, R.K.Wierenga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.53 / 2.15
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 38.815, 73.898, 81.08, 83.12, 89.33, 77.11
R / Rfree (%) 23.5 / 27.8

Other elements in 7qh0:

The structure of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation (pdb code 7qh0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation, PDB code: 7qh0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7qh0

Go back to Chlorine Binding Sites List in 7qh0
Chlorine binding site 1 out of 2 in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:36.7
occ:1.00
N B:GLU241 3.2 18.6 1.0
CD B:LYS239 3.5 24.2 1.0
CB B:LYS239 3.5 16.8 1.0
CB B:GLU241 3.6 17.0 1.0
CD B:PRO240 3.7 20.1 1.0
N B:PRO240 3.8 17.9 1.0
CA B:GLU241 3.9 17.4 1.0
C B:PRO240 4.0 16.8 1.0
CG B:LYS239 4.1 21.1 1.0
CB B:PRO240 4.1 16.6 1.0
CA B:PRO240 4.2 17.6 1.0
C B:LYS239 4.3 17.5 1.0
CG B:PRO240 4.3 19.4 1.0
CA B:LYS239 4.4 19.8 1.0
CE B:LYS239 4.6 24.6 1.0
OE1 B:GLU241 4.6 23.3 1.0
CG B:GLU241 4.7 20.9 1.0

Chlorine binding site 2 out of 2 in 7qh0

Go back to Chlorine Binding Sites List in 7qh0
Chlorine binding site 2 out of 2 in the Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:15.2
occ:1.00
N D:ILE62 3.4 15.6 1.0
O D:HOH423 3.4 16.6 1.0
CA D:VAL61 3.7 15.2 1.0
CG1 D:ILE62 3.9 18.0 1.0
CB D:VAL61 4.0 15.3 1.0
C D:VAL61 4.0 14.6 1.0
CD1 D:ILE62 4.2 17.8 1.0
CG1 D:VAL61 4.2 14.7 1.0
CB D:ILE62 4.2 15.8 1.0
CA D:ILE62 4.3 14.9 1.0
O D:ILE62 4.5 14.5 1.0
O D:GLY87 4.6 20.6 1.0
O D:TYR60 4.8 14.0 1.0
C D:ILE62 4.9 14.8 1.0
N D:VAL61 5.0 13.5 1.0

Reference:

G.Cordara, R.K.Wierenga. Apo Structure of the Leishmania Mexicana Triose-Phosphate Isomerase (Lmtim), N11A-E65Q Variant, Open Conformation To Be Published.
Page generated: Tue Apr 4 21:25:58 2023

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