Chlorine in PDB 7s3d: Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light
Enzymatic activity of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light
All present enzymatic activity of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light:
1.97.1.12;
Other elements in 7s3d:
The structure of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light
(pdb code 7s3d). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light, PDB code: 7s3d:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 7s3d
Go back to
Chlorine Binding Sites List in 7s3d
Chlorine binding site 1 out
of 3 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light
![](/pictures/CL/pdb/s3/7s3d-CL-sphere_01.jpg) Mono view
![](/pictures/CL/pdb/s3/7s3d-CL-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl7001
b:30.0
occ:1.00
|
NH2
|
A:ARG678
|
2.8
|
5.0
|
1.0
|
OG1
|
A:THR672
|
3.1
|
5.0
|
1.0
|
CD
|
A:ARG469
|
3.3
|
4.7
|
1.0
|
NH1
|
A:ARG469
|
3.4
|
4.7
|
1.0
|
NH1
|
A:ARG678
|
3.5
|
5.0
|
1.0
|
CZ
|
A:ARG678
|
3.6
|
5.0
|
1.0
|
O
|
B:TYR645
|
3.6
|
5.0
|
1.0
|
N
|
A:GLY675
|
3.7
|
5.0
|
1.0
|
CA
|
B:ASN646
|
3.9
|
14.1
|
1.0
|
CA
|
A:GLY675
|
4.0
|
5.0
|
1.0
|
ND2
|
A:ASN674
|
4.0
|
2.1
|
1.0
|
CD2
|
B:TYR645
|
4.0
|
5.0
|
1.0
|
CB
|
A:THR672
|
4.1
|
5.0
|
1.0
|
CB
|
A:ASN674
|
4.2
|
2.1
|
1.0
|
C
|
B:ASN646
|
4.2
|
14.1
|
1.0
|
NE
|
A:ARG469
|
4.2
|
4.7
|
1.0
|
CD
|
B:PRO647
|
4.2
|
34.0
|
1.0
|
CE2
|
B:TYR645
|
4.2
|
5.0
|
1.0
|
CZ
|
A:ARG469
|
4.2
|
4.7
|
1.0
|
C
|
B:TYR645
|
4.3
|
5.0
|
1.0
|
CG
|
A:ARG469
|
4.3
|
4.7
|
1.0
|
C
|
A:ASN674
|
4.3
|
2.1
|
1.0
|
CG2
|
A:THR672
|
4.4
|
5.0
|
1.0
|
N
|
B:ASN646
|
4.4
|
14.1
|
1.0
|
N
|
B:PRO647
|
4.4
|
34.0
|
1.0
|
CG
|
A:ASN674
|
4.5
|
2.1
|
1.0
|
O
|
B:ASN646
|
4.7
|
14.1
|
1.0
|
CG
|
B:PRO647
|
4.8
|
34.0
|
1.0
|
CA
|
A:ASN674
|
4.8
|
2.1
|
1.0
|
NE
|
A:ARG678
|
4.8
|
5.0
|
1.0
|
O
|
A:ASN674
|
4.9
|
2.1
|
1.0
|
CB
|
B:ASN646
|
5.0
|
14.1
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 7s3d
Go back to
Chlorine Binding Sites List in 7s3d
Chlorine binding site 2 out
of 3 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light
![](/pictures/CL/pdb/s3/7s3d-CL-sphere_02.jpg) Mono view
![](/pictures/CL/pdb/s3/7s3d-CL-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl7001
b:30.0
occ:1.00
|
NH2
|
G:ARG678
|
2.8
|
5.0
|
1.0
|
OG1
|
G:THR672
|
3.1
|
5.0
|
1.0
|
CD
|
G:ARG469
|
3.3
|
4.7
|
1.0
|
NH1
|
G:ARG469
|
3.4
|
4.7
|
1.0
|
NH1
|
G:ARG678
|
3.5
|
5.0
|
1.0
|
CZ
|
G:ARG678
|
3.6
|
5.0
|
1.0
|
O
|
H:TYR645
|
3.6
|
5.0
|
1.0
|
N
|
G:GLY675
|
3.7
|
5.0
|
1.0
|
CA
|
H:ASN646
|
3.9
|
14.1
|
1.0
|
CA
|
G:GLY675
|
4.0
|
5.0
|
1.0
|
ND2
|
G:ASN674
|
4.0
|
2.1
|
1.0
|
CD2
|
H:TYR645
|
4.0
|
5.0
|
1.0
|
CB
|
G:THR672
|
4.1
|
5.0
|
1.0
|
CB
|
G:ASN674
|
4.2
|
2.1
|
1.0
|
C
|
H:ASN646
|
4.2
|
14.1
|
1.0
|
NE
|
G:ARG469
|
4.2
|
4.7
|
1.0
|
CD
|
H:PRO647
|
4.2
|
34.0
|
1.0
|
CE2
|
H:TYR645
|
4.2
|
5.0
|
1.0
|
CZ
|
G:ARG469
|
4.2
|
4.7
|
1.0
|
C
|
H:TYR645
|
4.3
|
5.0
|
1.0
|
CG
|
G:ARG469
|
4.3
|
4.7
|
1.0
|
C
|
G:ASN674
|
4.3
|
2.1
|
1.0
|
CG2
|
G:THR672
|
4.4
|
5.0
|
1.0
|
N
|
H:ASN646
|
4.4
|
14.1
|
1.0
|
N
|
H:PRO647
|
4.4
|
34.0
|
1.0
|
CG
|
G:ASN674
|
4.5
|
2.1
|
1.0
|
O
|
H:ASN646
|
4.7
|
14.1
|
1.0
|
CG
|
H:PRO647
|
4.8
|
34.0
|
1.0
|
CA
|
G:ASN674
|
4.8
|
2.1
|
1.0
|
NE
|
G:ARG678
|
4.8
|
5.0
|
1.0
|
O
|
G:ASN674
|
4.9
|
2.1
|
1.0
|
CB
|
H:ASN646
|
5.0
|
14.1
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 7s3d
Go back to
Chlorine Binding Sites List in 7s3d
Chlorine binding site 3 out
of 3 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light
![](/pictures/CL/pdb/s3/7s3d-CL-sphere_03.jpg) Mono view
![](/pictures/CL/pdb/s3/7s3d-CL-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Cl7001
b:30.0
occ:1.00
|
NH2
|
a:ARG678
|
2.8
|
5.0
|
1.0
|
OG1
|
a:THR672
|
3.1
|
5.0
|
1.0
|
CD
|
a:ARG469
|
3.3
|
4.7
|
1.0
|
NH1
|
a:ARG469
|
3.4
|
4.7
|
1.0
|
NH1
|
a:ARG678
|
3.5
|
5.0
|
1.0
|
CZ
|
a:ARG678
|
3.6
|
5.0
|
1.0
|
O
|
b:TYR645
|
3.6
|
5.0
|
1.0
|
N
|
a:GLY675
|
3.7
|
5.0
|
1.0
|
CA
|
b:ASN646
|
3.9
|
14.1
|
1.0
|
ND2
|
a:ASN674
|
4.0
|
2.1
|
1.0
|
CA
|
a:GLY675
|
4.0
|
5.0
|
1.0
|
CD2
|
b:TYR645
|
4.0
|
5.0
|
1.0
|
CB
|
a:THR672
|
4.1
|
5.0
|
1.0
|
CB
|
a:ASN674
|
4.2
|
2.1
|
1.0
|
C
|
b:ASN646
|
4.2
|
14.1
|
1.0
|
NE
|
a:ARG469
|
4.2
|
4.7
|
1.0
|
CD
|
b:PRO647
|
4.2
|
34.0
|
1.0
|
CE2
|
b:TYR645
|
4.2
|
5.0
|
1.0
|
CZ
|
a:ARG469
|
4.2
|
4.7
|
1.0
|
C
|
b:TYR645
|
4.3
|
5.0
|
1.0
|
CG
|
a:ARG469
|
4.3
|
4.7
|
1.0
|
C
|
a:ASN674
|
4.3
|
2.1
|
1.0
|
CG2
|
a:THR672
|
4.4
|
5.0
|
1.0
|
N
|
b:ASN646
|
4.4
|
14.1
|
1.0
|
N
|
b:PRO647
|
4.4
|
34.0
|
1.0
|
CG
|
a:ASN674
|
4.5
|
2.1
|
1.0
|
O
|
b:ASN646
|
4.7
|
14.1
|
1.0
|
CG
|
b:PRO647
|
4.8
|
34.0
|
1.0
|
CA
|
a:ASN674
|
4.8
|
2.1
|
1.0
|
NE
|
a:ARG678
|
4.8
|
5.0
|
1.0
|
O
|
a:ASN674
|
4.9
|
2.1
|
1.0
|
CB
|
b:ASN646
|
5.0
|
14.1
|
1.0
|
|
Reference:
C.J.Gisriel,
D.A.Flesher,
G.Shen,
J.Wang,
M.-Y.Ho,
G.W.Brudvig,
D.A.Bryant.
Structure of A Photosystem I-Ferredoxin Complex From A Marine Cyanobacterium Provides Insights Into Far-Red Light Photoacclimation J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2021.101408
Page generated: Tue Jul 30 04:00:15 2024
|