Chlorine in PDB 7s3d: Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light

Enzymatic activity of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light

All present enzymatic activity of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light:
1.97.1.12;

Other elements in 7s3d:

The structure of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Iron (Fe) 42 atoms
Magnesium (Mg) 276 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light (pdb code 7s3d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light, PDB code: 7s3d:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 7s3d

Go back to Chlorine Binding Sites List in 7s3d
Chlorine binding site 1 out of 3 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl7001

b:30.0
occ:1.00
NH2 A:ARG678 2.8 5.0 1.0
OG1 A:THR672 3.1 5.0 1.0
CD A:ARG469 3.3 4.7 1.0
NH1 A:ARG469 3.4 4.7 1.0
NH1 A:ARG678 3.5 5.0 1.0
CZ A:ARG678 3.6 5.0 1.0
O B:TYR645 3.6 5.0 1.0
N A:GLY675 3.7 5.0 1.0
CA B:ASN646 3.9 14.1 1.0
CA A:GLY675 4.0 5.0 1.0
ND2 A:ASN674 4.0 2.1 1.0
CD2 B:TYR645 4.0 5.0 1.0
CB A:THR672 4.1 5.0 1.0
CB A:ASN674 4.2 2.1 1.0
C B:ASN646 4.2 14.1 1.0
NE A:ARG469 4.2 4.7 1.0
CD B:PRO647 4.2 34.0 1.0
CE2 B:TYR645 4.2 5.0 1.0
CZ A:ARG469 4.2 4.7 1.0
C B:TYR645 4.3 5.0 1.0
CG A:ARG469 4.3 4.7 1.0
C A:ASN674 4.3 2.1 1.0
CG2 A:THR672 4.4 5.0 1.0
N B:ASN646 4.4 14.1 1.0
N B:PRO647 4.4 34.0 1.0
CG A:ASN674 4.5 2.1 1.0
O B:ASN646 4.7 14.1 1.0
CG B:PRO647 4.8 34.0 1.0
CA A:ASN674 4.8 2.1 1.0
NE A:ARG678 4.8 5.0 1.0
O A:ASN674 4.9 2.1 1.0
CB B:ASN646 5.0 14.1 1.0

Chlorine binding site 2 out of 3 in 7s3d

Go back to Chlorine Binding Sites List in 7s3d
Chlorine binding site 2 out of 3 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl7001

b:30.0
occ:1.00
NH2 G:ARG678 2.8 5.0 1.0
OG1 G:THR672 3.1 5.0 1.0
CD G:ARG469 3.3 4.7 1.0
NH1 G:ARG469 3.4 4.7 1.0
NH1 G:ARG678 3.5 5.0 1.0
CZ G:ARG678 3.6 5.0 1.0
O H:TYR645 3.6 5.0 1.0
N G:GLY675 3.7 5.0 1.0
CA H:ASN646 3.9 14.1 1.0
CA G:GLY675 4.0 5.0 1.0
ND2 G:ASN674 4.0 2.1 1.0
CD2 H:TYR645 4.0 5.0 1.0
CB G:THR672 4.1 5.0 1.0
CB G:ASN674 4.2 2.1 1.0
C H:ASN646 4.2 14.1 1.0
NE G:ARG469 4.2 4.7 1.0
CD H:PRO647 4.2 34.0 1.0
CE2 H:TYR645 4.2 5.0 1.0
CZ G:ARG469 4.2 4.7 1.0
C H:TYR645 4.3 5.0 1.0
CG G:ARG469 4.3 4.7 1.0
C G:ASN674 4.3 2.1 1.0
CG2 G:THR672 4.4 5.0 1.0
N H:ASN646 4.4 14.1 1.0
N H:PRO647 4.4 34.0 1.0
CG G:ASN674 4.5 2.1 1.0
O H:ASN646 4.7 14.1 1.0
CG H:PRO647 4.8 34.0 1.0
CA G:ASN674 4.8 2.1 1.0
NE G:ARG678 4.8 5.0 1.0
O G:ASN674 4.9 2.1 1.0
CB H:ASN646 5.0 14.1 1.0

Chlorine binding site 3 out of 3 in 7s3d

Go back to Chlorine Binding Sites List in 7s3d
Chlorine binding site 3 out of 3 in the Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Photosystem I with Bound Ferredoxin From Synechococcus Sp. Pcc 7335 Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl7001

b:30.0
occ:1.00
NH2 a:ARG678 2.8 5.0 1.0
OG1 a:THR672 3.1 5.0 1.0
CD a:ARG469 3.3 4.7 1.0
NH1 a:ARG469 3.4 4.7 1.0
NH1 a:ARG678 3.5 5.0 1.0
CZ a:ARG678 3.6 5.0 1.0
O b:TYR645 3.6 5.0 1.0
N a:GLY675 3.7 5.0 1.0
CA b:ASN646 3.9 14.1 1.0
ND2 a:ASN674 4.0 2.1 1.0
CA a:GLY675 4.0 5.0 1.0
CD2 b:TYR645 4.0 5.0 1.0
CB a:THR672 4.1 5.0 1.0
CB a:ASN674 4.2 2.1 1.0
C b:ASN646 4.2 14.1 1.0
NE a:ARG469 4.2 4.7 1.0
CD b:PRO647 4.2 34.0 1.0
CE2 b:TYR645 4.2 5.0 1.0
CZ a:ARG469 4.2 4.7 1.0
C b:TYR645 4.3 5.0 1.0
CG a:ARG469 4.3 4.7 1.0
C a:ASN674 4.3 2.1 1.0
CG2 a:THR672 4.4 5.0 1.0
N b:ASN646 4.4 14.1 1.0
N b:PRO647 4.4 34.0 1.0
CG a:ASN674 4.5 2.1 1.0
O b:ASN646 4.7 14.1 1.0
CG b:PRO647 4.8 34.0 1.0
CA a:ASN674 4.8 2.1 1.0
NE a:ARG678 4.8 5.0 1.0
O a:ASN674 4.9 2.1 1.0
CB b:ASN646 5.0 14.1 1.0

Reference:

C.J.Gisriel, D.A.Flesher, G.Shen, J.Wang, M.-Y.Ho, G.W.Brudvig, D.A.Bryant. Structure of A Photosystem I-Ferredoxin Complex From A Marine Cyanobacterium Provides Insights Into Far-Red Light Photoacclimation J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2021.101408
Page generated: Thu Nov 25 08:55:50 2021

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