Chlorine in PDB 7sn0: Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2, PDB code: 7sn0 was solved by J.Pan, J.Abraham, S.Clark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 111.96 / 3.08
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.709, 104.015, 223.911, 90, 90, 90
R / Rfree (%) 23.5 / 28.6

Other elements in 7sn0:

The structure of Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2 (pdb code 7sn0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2, PDB code: 7sn0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7sn0

Go back to Chlorine Binding Sites List in 7sn0
Chlorine binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:97.0
occ:1.00
 NH1 A:ARG169 2.9 88.1 1.0
NE A:ARG169 3.1 89.1 1.0
CB A:ASP499 3.2 89.1 1.0
CZ A:ARG169 3.4 89.3 1.0
CZ2 A:TRP478 3.8 82.4 1.0
NE1 A:TRP477 3.8 78.9 1.0
O A:ASP499 3.9 87.9 1.0
CG A:ASP499 4.1 91.2 1.0
CH2 A:TRP478 4.1 82.2 1.0
CA A:ASP499 4.2 88.2 1.0
C A:ASP499 4.2 87.9 1.0
CZ2 A:TRP165 4.2 88.7 1.0
CD A:ARG169 4.3 90.1 1.0
OD2 A:ASP499 4.3 90.4 1.0
CE A:LYS481 4.5 98.2 1.0
CE2 A:TRP477 4.6 78.7 1.0
NZ A:LYS481 4.7 102.0 1.0
CZ2 A:TRP477 4.7 79.0 1.0
OG A:SER502 4.7 84.2 1.0
NH2 A:ARG169 4.8 89.6 1.0
CD1 A:TRP271 4.8 74.3 1.0
CE2 A:TRP165 4.8 87.8 1.0
CE2 A:TRP478 4.8 82.5 1.0
CD1 A:TRP477 4.9 79.2 1.0
NE1 A:TRP165 4.9 87.7 1.0
CG A:ARG169 5.0 90.2 1.0
CH2 A:TRP165 5.0 88.5 1.0

Chlorine binding site 2 out of 2 in 7sn0

Go back to Chlorine Binding Sites List in 7sn0
Chlorine binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Spike Protein Receptor Binding Domain of Escape Mutant Sars-Cov-2 From Immunocompromised Patient (D146*) in Complex with Human Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl902

b:110.7
occ:1.00
 NE B:ARG169 3.1 90.0 1.0
CB B:ASP499 3.4 78.0 1.0
NE1 B:TRP477 3.7 89.5 1.0
NH1 B:ARG169 3.7 91.4 1.0
CZ2 B:TRP478 3.7 86.4 1.0
CZ B:ARG169 3.8 91.8 1.0
CH2 B:TRP478 4.0 86.5 1.0
O B:ASP499 4.0 75.4 1.0
CD B:ARG169 4.1 88.1 1.0
CE B:LYS481 4.1 98.0 1.0
C B:ASP499 4.3 75.1 1.0
CG B:ASP499 4.3 83.2 1.0
CA B:ASP499 4.3 76.2 1.0
CZ2 B:TRP165 4.3 90.1 1.0
NZ B:LYS481 4.4 99.5 1.0
CE2 B:TRP477 4.4 89.4 1.0
OD2 B:ASP499 4.4 86.1 1.0
CZ2 B:TRP477 4.4 90.4 1.0
CD1 B:TRP477 4.7 89.1 1.0
CE2 B:TRP478 4.8 86.1 1.0
CD1 B:TRP271 4.8 75.5 1.0
OG B:SER502 4.8 77.1 1.0
CE2 B:TRP165 4.9 89.1 1.0
NE1 B:TRP165 5.0 89.3 1.0

Reference:

K.G.Nabel, S.Shankar, J.Pan, L.E.Clark, P.Yang, A.Coscia, L.G.A.Mckay, H.H.Varnum, V.Brusic, N.V.Tolan, G.Zhou, M.Desjardins, S.E.Turbett, S.Kanjilal, A.C.Sherman, A.Dighe, R.C.Larocque, E.T.Ryan, C.Tylek, J.F.Cohen-Solal, A.T.Darcy, D.Tavella, A.Clabbers, Y.Fan, A.Griffiths, I.R.Correia, J.Seagal, L.R.Baden, R.C.Charles, J.Abraham. Structural Basis For Continued Antibody Evasion By the Sars-Cov-2 Receptor Binding Domain Science 2021.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABL6251
Page generated: Fri Dec 17 08:58:29 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy