Chlorine in PDB 7tb0: E. Faecium Muraa in Complex with Fosfomycin and Unag
Enzymatic activity of E. Faecium Muraa in Complex with Fosfomycin and Unag
All present enzymatic activity of E. Faecium Muraa in Complex with Fosfomycin and Unag:
2.5.1.7;
Protein crystallography data
The structure of E. Faecium Muraa in Complex with Fosfomycin and Unag, PDB code: 7tb0
was solved by
Y.Zhou,
Y.Shamoo,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.82 /
1.65
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
72.03,
96.81,
96.821,
115.06,
99.15,
103.88
|
R / Rfree (%)
|
11.6 /
15.8
|
Other elements in 7tb0:
The structure of E. Faecium Muraa in Complex with Fosfomycin and Unag also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the E. Faecium Muraa in Complex with Fosfomycin and Unag
(pdb code 7tb0). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
E. Faecium Muraa in Complex with Fosfomycin and Unag, PDB code: 7tb0:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 7tb0
Go back to
Chlorine Binding Sites List in 7tb0
Chlorine binding site 1 out
of 4 in the E. Faecium Muraa in Complex with Fosfomycin and Unag
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of E. Faecium Muraa in Complex with Fosfomycin and Unag within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl509
b:15.5
occ:1.00
|
O
|
A:HOH775
|
3.1
|
10.3
|
1.0
|
NH1
|
A:ARG399
|
3.1
|
12.3
|
1.0
|
O
|
A:HOH969
|
3.1
|
24.5
|
1.0
|
N
|
A:LEU372
|
3.2
|
9.9
|
1.0
|
CD1
|
A:TYR396
|
3.5
|
12.4
|
1.0
|
SG
|
A:CYS119
|
3.5
|
9.9
|
1.0
|
CA
|
A:ASP371
|
3.5
|
9.4
|
1.0
|
CA
|
A:CYS119
|
3.7
|
8.8
|
1.0
|
C
|
A:ASP371
|
3.8
|
9.7
|
1.0
|
CD
|
A:ARG399
|
3.8
|
10.7
|
1.0
|
CB
|
A:ASP371
|
3.9
|
11.1
|
1.0
|
N
|
A:CYS119
|
4.1
|
8.5
|
1.0
|
CB
|
A:LEU372
|
4.1
|
9.5
|
1.0
|
CB
|
A:CYS119
|
4.1
|
9.5
|
1.0
|
CB
|
A:TYR396
|
4.1
|
10.9
|
1.0
|
CA
|
A:LEU372
|
4.2
|
10.0
|
1.0
|
CG
|
A:TYR396
|
4.2
|
11.1
|
1.0
|
CZ
|
A:ARG399
|
4.2
|
11.4
|
1.0
|
CE1
|
A:TYR396
|
4.3
|
10.9
|
1.0
|
O
|
A:HOH884
|
4.3
|
24.8
|
1.0
|
CA
|
A:TYR396
|
4.4
|
10.0
|
1.0
|
NE
|
A:ARG399
|
4.4
|
10.8
|
1.0
|
C
|
A:GLY118
|
4.6
|
9.9
|
1.0
|
O
|
A:TYR396
|
4.6
|
10.7
|
1.0
|
N
|
A:ASP371
|
4.7
|
10.8
|
1.0
|
O
|
A:GLY118
|
4.7
|
10.6
|
1.0
|
O
|
A:THR370
|
4.8
|
9.3
|
1.0
|
C
|
A:CYS119
|
4.9
|
8.3
|
1.0
|
N
|
A:ALA120
|
4.9
|
9.0
|
1.0
|
CG
|
A:ARG399
|
5.0
|
10.0
|
1.0
|
C
|
A:TYR396
|
5.0
|
10.7
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 7tb0
Go back to
Chlorine Binding Sites List in 7tb0
Chlorine binding site 2 out
of 4 in the E. Faecium Muraa in Complex with Fosfomycin and Unag
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of E. Faecium Muraa in Complex with Fosfomycin and Unag within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl504
b:18.0
occ:1.00
|
O
|
B:HOH954
|
3.1
|
24.1
|
1.0
|
O
|
B:HOH810
|
3.1
|
13.2
|
1.0
|
NH1
|
B:ARG399
|
3.2
|
13.7
|
1.0
|
N
|
B:LEU372
|
3.2
|
11.3
|
1.0
|
CD1
|
B:TYR396
|
3.5
|
12.5
|
1.0
|
SG
|
B:CYS119
|
3.5
|
11.4
|
1.0
|
CA
|
B:ASP371
|
3.5
|
11.6
|
1.0
|
CA
|
B:CYS119
|
3.7
|
10.3
|
1.0
|
C
|
B:ASP371
|
3.8
|
12.1
|
1.0
|
CD
|
B:ARG399
|
3.8
|
14.5
|
1.0
|
CB
|
B:ASP371
|
3.9
|
12.1
|
1.0
|
CB
|
B:LEU372
|
4.1
|
11.9
|
1.0
|
N
|
B:CYS119
|
4.1
|
10.3
|
1.0
|
CB
|
B:CYS119
|
4.1
|
11.0
|
1.0
|
CG
|
B:TYR396
|
4.1
|
12.0
|
1.0
|
CB
|
B:TYR396
|
4.1
|
12.2
|
1.0
|
CA
|
B:LEU372
|
4.2
|
12.1
|
1.0
|
CZ
|
B:ARG399
|
4.2
|
14.8
|
1.0
|
CE1
|
B:TYR396
|
4.2
|
12.6
|
1.0
|
O
|
B:HOH881
|
4.3
|
26.6
|
1.0
|
CA
|
B:TYR396
|
4.4
|
11.7
|
1.0
|
NE
|
B:ARG399
|
4.5
|
15.7
|
1.0
|
C
|
B:GLY118
|
4.6
|
11.3
|
1.0
|
O
|
B:TYR396
|
4.6
|
12.8
|
1.0
|
N
|
B:ASP371
|
4.7
|
11.9
|
1.0
|
O
|
B:GLY118
|
4.8
|
10.8
|
1.0
|
O
|
B:THR370
|
4.9
|
13.5
|
1.0
|
C
|
B:CYS119
|
4.9
|
10.8
|
1.0
|
N
|
B:ALA120
|
5.0
|
9.2
|
1.0
|
CG
|
B:ARG399
|
5.0
|
14.2
|
1.0
|
C
|
B:TYR396
|
5.0
|
11.7
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 7tb0
Go back to
Chlorine Binding Sites List in 7tb0
Chlorine binding site 3 out
of 4 in the E. Faecium Muraa in Complex with Fosfomycin and Unag
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of E. Faecium Muraa in Complex with Fosfomycin and Unag within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl506
b:16.9
occ:1.00
|
O
|
C:HOH948
|
3.1
|
26.4
|
1.0
|
O
|
C:HOH816
|
3.2
|
12.6
|
1.0
|
NH1
|
C:ARG399
|
3.2
|
13.3
|
1.0
|
N
|
C:LEU372
|
3.2
|
11.1
|
1.0
|
CD1
|
C:TYR396
|
3.5
|
11.7
|
1.0
|
CA
|
C:ASP371
|
3.5
|
10.5
|
1.0
|
SG
|
C:CYS119
|
3.5
|
11.4
|
1.0
|
CA
|
C:CYS119
|
3.7
|
10.1
|
1.0
|
C
|
C:ASP371
|
3.8
|
10.6
|
1.0
|
CD
|
C:ARG399
|
3.9
|
14.3
|
1.0
|
CB
|
C:ASP371
|
3.9
|
11.9
|
1.0
|
CB
|
C:LEU372
|
4.0
|
10.3
|
1.0
|
N
|
C:CYS119
|
4.1
|
9.2
|
1.0
|
CB
|
C:TYR396
|
4.1
|
11.0
|
1.0
|
CB
|
C:CYS119
|
4.1
|
10.7
|
1.0
|
CG
|
C:TYR396
|
4.1
|
12.1
|
1.0
|
CA
|
C:LEU372
|
4.1
|
10.3
|
1.0
|
CZ
|
C:ARG399
|
4.3
|
13.3
|
1.0
|
CE1
|
C:TYR396
|
4.3
|
12.7
|
1.0
|
O
|
C:HOH906
|
4.3
|
28.3
|
1.0
|
CA
|
C:TYR396
|
4.4
|
11.3
|
1.0
|
NE
|
C:ARG399
|
4.5
|
12.8
|
1.0
|
C
|
C:GLY118
|
4.6
|
11.4
|
1.0
|
O
|
C:TYR396
|
4.7
|
11.1
|
1.0
|
N
|
C:ASP371
|
4.7
|
11.1
|
1.0
|
O
|
C:GLY118
|
4.8
|
11.6
|
1.0
|
O
|
C:THR370
|
4.9
|
13.0
|
1.0
|
C
|
C:CYS119
|
4.9
|
8.8
|
1.0
|
N
|
C:ALA120
|
4.9
|
9.4
|
1.0
|
CG
|
C:ARG399
|
5.0
|
13.6
|
1.0
|
C
|
C:TYR396
|
5.0
|
11.8
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 7tb0
Go back to
Chlorine Binding Sites List in 7tb0
Chlorine binding site 4 out
of 4 in the E. Faecium Muraa in Complex with Fosfomycin and Unag
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of E. Faecium Muraa in Complex with Fosfomycin and Unag within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl506
b:16.8
occ:1.00
|
O
|
D:HOH970
|
3.1
|
24.0
|
1.0
|
NH1
|
D:ARG399
|
3.1
|
11.8
|
1.0
|
O
|
D:HOH774
|
3.1
|
11.9
|
1.0
|
N
|
D:LEU372
|
3.3
|
9.2
|
1.0
|
CD1
|
D:TYR396
|
3.5
|
10.8
|
1.0
|
SG
|
D:CYS119
|
3.5
|
10.0
|
1.0
|
CA
|
D:ASP371
|
3.6
|
10.2
|
1.0
|
CA
|
D:CYS119
|
3.7
|
8.7
|
1.0
|
CD
|
D:ARG399
|
3.8
|
11.2
|
1.0
|
C
|
D:ASP371
|
3.9
|
10.3
|
1.0
|
CB
|
D:ASP371
|
3.9
|
10.7
|
1.0
|
CB
|
D:LEU372
|
4.0
|
9.3
|
1.0
|
N
|
D:CYS119
|
4.1
|
8.1
|
1.0
|
CB
|
D:CYS119
|
4.1
|
10.0
|
1.0
|
CA
|
D:LEU372
|
4.2
|
9.6
|
1.0
|
CB
|
D:TYR396
|
4.2
|
10.2
|
1.0
|
CG
|
D:TYR396
|
4.2
|
10.2
|
1.0
|
CZ
|
D:ARG399
|
4.2
|
12.7
|
1.0
|
CE1
|
D:TYR396
|
4.2
|
11.2
|
1.0
|
NE
|
D:ARG399
|
4.4
|
12.7
|
1.0
|
CA
|
D:TYR396
|
4.4
|
10.4
|
1.0
|
C
|
D:GLY118
|
4.6
|
8.1
|
1.0
|
O
|
D:TYR396
|
4.6
|
11.9
|
1.0
|
O
|
D:GLY118
|
4.8
|
10.4
|
1.0
|
N
|
D:ASP371
|
4.8
|
11.5
|
1.0
|
C
|
D:CYS119
|
4.9
|
8.1
|
1.0
|
O
|
D:THR370
|
4.9
|
11.4
|
1.0
|
N
|
D:ALA120
|
4.9
|
8.9
|
1.0
|
CG
|
D:ARG399
|
5.0
|
11.1
|
1.0
|
|
Reference:
Y.Zhou,
Y.Shamoo.
E. Faecium Muraa in Complex with Fosfomycin and Unag To Be Published.
Page generated: Tue Jul 30 04:32:22 2024
|