Atomistry » Chlorine » PDB 7taz-7tn4 » 7tn4
Atomistry »
  Chlorine »
    PDB 7taz-7tn4 »
      7tn4 »

Chlorine in PDB 7tn4: Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion

Enzymatic activity of Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion

All present enzymatic activity of Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion:
3.6.1.52;

Protein crystallography data

The structure of Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion, PDB code: 7tn4 was solved by G.Zong, H.Wang, S.B.Shears, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.40 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.149, 59.743, 62.769, 90, 90, 90
R / Rfree (%) 18.3 / 21.7

Other elements in 7tn4:

The structure of Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion also contains other interesting chemical elements:

Fluorine (F) 1 atom
Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion (pdb code 7tn4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion, PDB code: 7tn4:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 7tn4

Go back to Chlorine Binding Sites List in 7tn4
Chlorine binding site 1 out of 2 in the Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl504

b:18.5
occ:1.00
 O A:HOH613 3.1 16.0 1.0
O A:HOH683 3.1 17.5 1.0
ND2 A:ASN86 3.3 18.1 1.0
NE2 A:GLN136 3.6 15.7 1.0
CE1 A:HIS91 3.7 15.9 1.0
CG A:GLN136 3.7 13.3 1.0
CB A:VAL135 4.0 15.1 1.0
CB A:ASN86 4.1 15.5 1.0
CD A:GLN136 4.1 14.8 1.0
NE2 A:HIS91 4.2 14.9 1.0
CG A:ASN86 4.2 17.1 1.0
CD A:LYS133 4.2 20.1 1.0
N A:GLN136 4.6 13.6 1.0
CG1 A:VAL135 4.6 15.4 1.0
CE A:LYS133 4.6 25.4 1.0
OH A:TYR139 4.7 12.3 1.0
CG2 A:VAL135 4.7 15.4 1.0
O A:HOH631 4.7 9.3 1.0
ND1 A:HIS91 4.8 13.6 1.0
CB A:GLN136 4.9 13.3 1.0
CA A:VAL135 4.9 14.1 1.0

Chlorine binding site 2 out of 2 in 7tn4

Go back to Chlorine Binding Sites List in 7tn4
Chlorine binding site 2 out of 2 in the Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3) in Complex with 3-Diphosphoinositol 1,2,4,5-Tetrakisphosphate (3-Pp- IP4), Mg and Fluoride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:21.6
occ:1.00
 OG A:SER28 3.0 17.6 1.0
O A:HOH712 3.0 29.1 1.0
N A:GLU32 3.1 17.9 1.0
N A:SER28 3.2 16.9 1.0
N A:GLU33 3.4 16.3 1.0
OG A:SER30 3.5 25.7 0.5
N A:GLU31 3.7 19.4 1.0
O A:SER28 3.7 16.0 1.0
CB A:SER28 3.8 19.7 1.0
O A:GLU33 3.9 13.7 1.0
N A:ARG27 3.9 14.9 1.0
CA A:SER28 3.9 18.9 1.0
CB A:ARG27 3.9 21.3 1.0
CA A:GLU32 3.9 18.4 1.0
C A:ARG27 3.9 18.3 1.0
CA A:GLU31 4.0 19.5 1.0
C A:GLU31 4.0 17.3 1.0
CB A:GLU32 4.0 21.0 1.0
CA A:ARG27 4.1 16.7 1.0
C A:GLU32 4.1 17.6 1.0
C A:SER28 4.1 19.0 1.0
CB A:GLU33 4.3 19.6 1.0
CA A:GLU33 4.3 16.5 1.0
C A:SER30 4.4 20.2 1.0
C A:GLU33 4.6 14.7 1.0
CB A:SER30 4.6 17.9 0.5
O A:HOH716 4.7 32.7 1.0
CG A:GLU32 4.7 26.9 1.0
N A:SER30 4.7 19.8 1.0
CB A:SER30 4.7 22.4 0.5
CA A:SER30 4.8 19.3 0.5
CA A:SER30 4.8 21.5 0.5
CB A:PHE26 4.8 14.6 1.0
C A:PHE26 4.8 13.8 1.0
CG A:GLU33 4.9 25.7 1.0
O A:ARG27 5.0 18.0 1.0
O A:HOH608 5.0 22.5 1.0

Reference:

G.Zong, S.B.Shears, H.Wang. Structural and Catalytic Analyses of the Insp 6 Kinase Activities of Higher Plant Itpks. Faseb J. V. 36 22380 2022.
ISSN: ESSN 1530-6860
PubMed: 35635723
DOI: 10.1096/FJ.202200393R
Page generated: Tue Jul 30 04:40:13 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy