Chlorine in PDB 7uvm: Crystal Structure of Human Clpp Protease in Complex with Tr-27
Enzymatic activity of Crystal Structure of Human Clpp Protease in Complex with Tr-27
All present enzymatic activity of Crystal Structure of Human Clpp Protease in Complex with Tr-27:
3.4.21.92;
Protein crystallography data
The structure of Crystal Structure of Human Clpp Protease in Complex with Tr-27, PDB code: 7uvm
was solved by
M.F.Mabanglo,
W.A.Houry,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.40 /
2.19
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
143.148,
153.722,
105.101,
90,
117.76,
90
|
|
R / Rfree (%)
|
19.7 /
23.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
(pdb code 7uvm). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
Crystal Structure of Human Clpp Protease in Complex with Tr-27, PDB code: 7uvm:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 1 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:71.9
occ:1.00
|
CL19
|
A:OX0301
|
0.0
|
71.9
|
1.0
|
|
C18
|
A:OX0301
|
1.8
|
52.8
|
1.0
|
|
C17
|
A:OX0301
|
2.8
|
47.1
|
1.0
|
|
C20
|
A:OX0301
|
2.8
|
50.9
|
1.0
|
|
H171
|
A:OX0301
|
2.8
|
56.6
|
1.0
|
|
H201
|
A:OX0301
|
2.9
|
61.2
|
1.0
|
|
HD23
|
A:LEU79
|
2.9
|
55.0
|
1.0
|
|
HB2
|
G:PHE105
|
2.9
|
44.2
|
1.0
|
|
HG3
|
A:ARG78
|
3.1
|
77.5
|
1.0
|
|
HA
|
G:PHE105
|
3.4
|
43.4
|
1.0
|
|
HD1
|
G:PHE105
|
3.7
|
52.3
|
1.0
|
|
CD2
|
A:LEU79
|
3.7
|
45.8
|
1.0
|
|
HA
|
A:LEU79
|
3.7
|
58.5
|
1.0
|
|
CB
|
G:PHE105
|
3.8
|
36.8
|
1.0
|
|
HD21
|
A:LEU79
|
3.8
|
55.0
|
1.0
|
|
HG2
|
A:ARG78
|
3.8
|
77.5
|
1.0
|
|
CG
|
A:ARG78
|
3.9
|
64.5
|
1.0
|
|
HG
|
A:LEU79
|
3.9
|
62.7
|
1.0
|
|
CA
|
G:PHE105
|
3.9
|
36.1
|
1.0
|
|
C16
|
A:OX0301
|
4.1
|
49.2
|
1.0
|
|
C21
|
A:OX0301
|
4.1
|
52.0
|
1.0
|
|
HG12
|
A:ILE75
|
4.1
|
47.7
|
1.0
|
|
HB3
|
A:ARG78
|
4.1
|
67.2
|
1.0
|
|
H
|
G:PHE105
|
4.2
|
46.5
|
1.0
|
|
N
|
G:PHE105
|
4.2
|
38.7
|
1.0
|
|
O
|
G:ALA101
|
4.2
|
36.9
|
1.0
|
|
CG
|
A:LEU79
|
4.4
|
52.2
|
1.0
|
|
N
|
A:LEU79
|
4.4
|
46.3
|
1.0
|
|
CD1
|
G:PHE105
|
4.4
|
43.5
|
1.0
|
|
HB3
|
G:PHE105
|
4.4
|
44.2
|
1.0
|
|
HD11
|
A:ILE75
|
4.4
|
51.3
|
1.0
|
|
HD22
|
A:LEU79
|
4.4
|
55.0
|
1.0
|
|
CA
|
A:LEU79
|
4.5
|
48.7
|
1.0
|
|
HG13
|
A:ILE75
|
4.5
|
47.7
|
1.0
|
|
CB
|
A:ARG78
|
4.5
|
56.0
|
1.0
|
|
C
|
A:ARG78
|
4.6
|
43.5
|
1.0
|
|
C15
|
A:OX0301
|
4.6
|
54.4
|
1.0
|
|
CG
|
G:PHE105
|
4.6
|
38.1
|
1.0
|
|
H
|
A:LEU79
|
4.6
|
55.6
|
1.0
|
|
O
|
A:ARG78
|
4.7
|
38.8
|
1.0
|
|
CG1
|
A:ILE75
|
4.7
|
39.7
|
1.0
|
|
H161
|
A:OX0301
|
4.8
|
59.2
|
1.0
|
|
H211
|
A:OX0301
|
4.8
|
62.5
|
1.0
|
|
HB2
|
G:LEU104
|
4.8
|
44.4
|
1.0
|
|
HB2
|
A:GLU82
|
4.8
|
58.4
|
1.0
|
|
O
|
A:ILE75
|
4.8
|
43.5
|
1.0
|
|
C
|
G:LEU104
|
4.9
|
41.6
|
1.0
|
|
NE
|
A:ARG78
|
4.9
|
69.6
|
1.0
|
|
CB
|
A:LEU79
|
5.0
|
39.2
|
1.0
|
|
HB1
|
G:ALA101
|
5.0
|
42.5
|
1.0
|
|
HD12
|
A:ILE84
|
5.0
|
46.7
|
1.0
|
|
HE
|
A:ARG78
|
5.0
|
83.6
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 2 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:64.8
occ:1.00
|
CL19
|
B:OX0301
|
0.0
|
64.8
|
1.0
|
|
C18
|
B:OX0301
|
1.8
|
46.9
|
1.0
|
|
HD23
|
B:LEU79
|
2.7
|
57.2
|
1.0
|
|
HB2
|
A:PHE105
|
2.7
|
47.0
|
1.0
|
|
C20
|
B:OX0301
|
2.7
|
46.6
|
1.0
|
|
C17
|
B:OX0301
|
2.8
|
43.3
|
1.0
|
|
H201
|
B:OX0301
|
2.8
|
56.0
|
1.0
|
|
H171
|
B:OX0301
|
2.9
|
52.0
|
1.0
|
|
HG3
|
B:ARG78
|
3.0
|
53.7
|
1.0
|
|
HD1
|
A:PHE105
|
3.5
|
50.9
|
1.0
|
|
HA
|
A:PHE105
|
3.6
|
42.7
|
1.0
|
|
CD2
|
B:LEU79
|
3.6
|
47.6
|
1.0
|
|
CB
|
A:PHE105
|
3.6
|
39.1
|
1.0
|
|
HD21
|
B:LEU79
|
3.7
|
57.2
|
1.0
|
|
HG2
|
B:ARG78
|
3.7
|
53.7
|
1.0
|
|
HG
|
B:LEU79
|
3.7
|
54.1
|
1.0
|
|
HA
|
B:LEU79
|
3.8
|
50.9
|
1.0
|
|
CG
|
B:ARG78
|
3.8
|
44.6
|
1.0
|
|
HG3
|
B:GLU82
|
4.0
|
64.0
|
1.0
|
|
CA
|
A:PHE105
|
4.0
|
35.5
|
1.0
|
|
HB3
|
B:ARG78
|
4.0
|
53.5
|
1.0
|
|
C21
|
B:OX0301
|
4.0
|
44.2
|
1.0
|
|
C16
|
B:OX0301
|
4.1
|
47.4
|
1.0
|
|
O
|
A:ALA101
|
4.1
|
35.2
|
1.0
|
|
HG13
|
B:ILE75
|
4.2
|
53.3
|
1.0
|
|
CG
|
B:LEU79
|
4.2
|
45.0
|
1.0
|
|
H
|
A:PHE105
|
4.2
|
44.2
|
1.0
|
|
HB3
|
A:PHE105
|
4.2
|
47.0
|
1.0
|
|
CD1
|
A:PHE105
|
4.2
|
42.4
|
1.0
|
|
HD22
|
B:LEU79
|
4.3
|
57.2
|
1.0
|
|
N
|
B:LEU79
|
4.3
|
38.4
|
1.0
|
|
N
|
A:PHE105
|
4.3
|
36.8
|
1.0
|
|
HG12
|
B:ILE75
|
4.3
|
53.3
|
1.0
|
|
H
|
B:LEU79
|
4.4
|
46.2
|
1.0
|
|
CG
|
A:PHE105
|
4.4
|
38.2
|
1.0
|
|
CA
|
B:LEU79
|
4.4
|
42.4
|
1.0
|
|
CB
|
B:ARG78
|
4.4
|
44.5
|
1.0
|
|
C
|
B:ARG78
|
4.5
|
37.8
|
1.0
|
|
C15
|
B:OX0301
|
4.5
|
43.5
|
1.0
|
|
HD11
|
B:ILE75
|
4.6
|
55.3
|
1.0
|
|
HB2
|
A:LEU104
|
4.6
|
42.4
|
1.0
|
|
O
|
B:ILE75
|
4.7
|
41.8
|
1.0
|
|
CG1
|
B:ILE75
|
4.7
|
44.4
|
1.0
|
|
HG2
|
B:GLU82
|
4.7
|
64.0
|
1.0
|
|
O
|
B:ARG78
|
4.7
|
36.6
|
1.0
|
|
HB1
|
A:ALA101
|
4.7
|
38.3
|
1.0
|
|
H211
|
B:OX0301
|
4.8
|
53.2
|
1.0
|
|
CG
|
B:GLU82
|
4.8
|
53.3
|
1.0
|
|
H161
|
B:OX0301
|
4.8
|
57.0
|
1.0
|
|
NE
|
B:ARG78
|
4.8
|
49.4
|
1.0
|
|
CB
|
B:LEU79
|
4.9
|
35.8
|
1.0
|
|
HE
|
B:ARG78
|
4.9
|
59.3
|
1.0
|
|
CD
|
B:ARG78
|
5.0
|
47.7
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 3 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:64.4
occ:1.00
|
CL19
|
C:OX0301
|
0.0
|
64.4
|
1.0
|
|
C18
|
C:OX0301
|
1.8
|
46.4
|
1.0
|
|
C20
|
C:OX0301
|
2.7
|
40.0
|
1.0
|
|
C17
|
C:OX0301
|
2.8
|
43.2
|
1.0
|
|
H171
|
C:OX0301
|
2.8
|
51.9
|
1.0
|
|
H201
|
C:OX0301
|
2.8
|
48.1
|
1.0
|
|
HD23
|
C:LEU79
|
2.9
|
60.1
|
1.0
|
|
HB2
|
B:PHE105
|
3.0
|
37.0
|
1.0
|
|
HG3
|
C:ARG78
|
3.2
|
55.1
|
1.0
|
|
HA
|
B:PHE105
|
3.3
|
35.4
|
1.0
|
|
HG2
|
C:ARG78
|
3.3
|
55.1
|
1.0
|
|
HD1
|
B:PHE105
|
3.5
|
46.4
|
1.0
|
|
HD21
|
C:LEU79
|
3.5
|
60.1
|
1.0
|
|
HG
|
C:LEU79
|
3.6
|
55.4
|
1.0
|
|
CD2
|
C:LEU79
|
3.6
|
50.0
|
1.0
|
|
CG
|
C:ARG78
|
3.7
|
45.8
|
1.0
|
|
HA
|
C:LEU79
|
3.7
|
45.5
|
1.0
|
|
CB
|
B:PHE105
|
3.8
|
30.7
|
1.0
|
|
CA
|
B:PHE105
|
3.9
|
29.4
|
1.0
|
|
C21
|
C:OX0301
|
4.0
|
37.7
|
1.0
|
|
HB3
|
C:ARG78
|
4.0
|
51.0
|
1.0
|
|
HG3
|
C:GLU82
|
4.0
|
58.2
|
1.0
|
|
C16
|
C:OX0301
|
4.0
|
37.2
|
1.0
|
|
N
|
B:PHE105
|
4.1
|
34.8
|
1.0
|
|
HG13
|
C:ILE75
|
4.1
|
54.2
|
1.0
|
|
H
|
B:PHE105
|
4.1
|
41.8
|
1.0
|
|
CG
|
C:LEU79
|
4.1
|
46.1
|
1.0
|
|
O
|
B:ALA101
|
4.2
|
33.6
|
1.0
|
|
CD1
|
B:PHE105
|
4.3
|
38.6
|
1.0
|
|
HD11
|
C:ILE75
|
4.3
|
53.0
|
1.0
|
|
N
|
C:LEU79
|
4.3
|
36.5
|
1.0
|
|
HD22
|
C:LEU79
|
4.4
|
60.1
|
1.0
|
|
CA
|
C:LEU79
|
4.4
|
37.9
|
1.0
|
|
HH11
|
C:ARG78
|
4.4
|
61.7
|
1.0
|
|
CB
|
C:ARG78
|
4.4
|
42.4
|
1.0
|
|
HB3
|
B:PHE105
|
4.5
|
37.0
|
1.0
|
|
CG
|
B:PHE105
|
4.5
|
31.9
|
1.0
|
|
C15
|
C:OX0301
|
4.5
|
36.6
|
1.0
|
|
H
|
C:LEU79
|
4.5
|
43.9
|
1.0
|
|
HG2
|
C:GLU82
|
4.5
|
58.2
|
1.0
|
|
NH1
|
C:ARG78
|
4.6
|
51.3
|
1.0
|
|
C
|
C:ARG78
|
4.6
|
32.8
|
1.0
|
|
HG12
|
C:ILE75
|
4.7
|
54.2
|
1.0
|
|
HB2
|
B:LEU104
|
4.7
|
37.1
|
1.0
|
|
H211
|
C:OX0301
|
4.7
|
45.4
|
1.0
|
|
CG
|
C:GLU82
|
4.7
|
48.5
|
1.0
|
|
HH12
|
C:ARG78
|
4.7
|
61.7
|
1.0
|
|
C
|
B:LEU104
|
4.8
|
36.9
|
1.0
|
|
CG1
|
C:ILE75
|
4.8
|
45.1
|
1.0
|
|
H161
|
C:OX0301
|
4.8
|
44.8
|
1.0
|
|
O
|
C:ILE75
|
4.8
|
37.1
|
1.0
|
|
CB
|
C:LEU79
|
4.8
|
38.3
|
1.0
|
|
O
|
C:ARG78
|
4.8
|
34.8
|
1.0
|
|
CZ
|
C:ARG78
|
4.9
|
58.3
|
1.0
|
|
HB1
|
B:ALA101
|
4.9
|
42.4
|
1.0
|
|
HB3
|
B:LEU104
|
5.0
|
37.1
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 4 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl301
b:58.8
occ:1.00
|
CL19
|
D:OX0301
|
0.0
|
58.8
|
1.0
|
|
C18
|
D:OX0301
|
1.8
|
42.7
|
1.0
|
|
HD23
|
D:LEU79
|
2.7
|
47.2
|
1.0
|
|
C17
|
D:OX0301
|
2.7
|
42.4
|
1.0
|
|
C20
|
D:OX0301
|
2.8
|
49.6
|
1.0
|
|
HB2
|
C:PHE105
|
2.8
|
39.8
|
1.0
|
|
H171
|
D:OX0301
|
2.8
|
50.9
|
1.0
|
|
H201
|
D:OX0301
|
2.9
|
59.7
|
1.0
|
|
HG3
|
D:ARG78
|
3.3
|
51.6
|
1.0
|
|
HD1
|
C:PHE105
|
3.4
|
53.0
|
1.0
|
|
HA
|
C:PHE105
|
3.4
|
36.4
|
1.0
|
|
CD2
|
D:LEU79
|
3.6
|
39.3
|
1.0
|
|
CB
|
C:PHE105
|
3.7
|
33.1
|
1.0
|
|
HG2
|
D:ARG78
|
3.8
|
51.6
|
1.0
|
|
HG13
|
D:ILE75
|
3.8
|
45.4
|
1.0
|
|
HA
|
D:LEU79
|
3.9
|
54.7
|
1.0
|
|
HD21
|
D:LEU79
|
3.9
|
47.2
|
1.0
|
|
CA
|
C:PHE105
|
3.9
|
30.3
|
1.0
|
|
CG
|
D:ARG78
|
4.0
|
43.0
|
1.0
|
|
HD11
|
D:ILE75
|
4.0
|
52.8
|
1.0
|
|
O
|
C:ALA101
|
4.0
|
32.8
|
1.0
|
|
C16
|
D:OX0301
|
4.0
|
42.6
|
1.0
|
|
HG3
|
D:GLU82
|
4.0
|
61.2
|
1.0
|
|
C21
|
D:OX0301
|
4.0
|
41.6
|
1.0
|
|
HG
|
D:LEU79
|
4.1
|
62.4
|
1.0
|
|
H
|
C:PHE105
|
4.1
|
37.7
|
1.0
|
|
HB3
|
D:ARG78
|
4.1
|
50.9
|
1.0
|
|
CD1
|
C:PHE105
|
4.2
|
44.1
|
1.0
|
|
N
|
C:PHE105
|
4.2
|
31.4
|
1.0
|
|
HD22
|
D:LEU79
|
4.2
|
47.2
|
1.0
|
|
HG12
|
D:ILE75
|
4.3
|
45.4
|
1.0
|
|
HB3
|
C:PHE105
|
4.3
|
39.8
|
1.0
|
|
CG
|
C:PHE105
|
4.4
|
34.5
|
1.0
|
|
N
|
D:LEU79
|
4.4
|
41.1
|
1.0
|
|
CG
|
D:LEU79
|
4.4
|
51.9
|
1.0
|
|
CG1
|
D:ILE75
|
4.4
|
37.8
|
1.0
|
|
H
|
D:LEU79
|
4.5
|
49.4
|
1.0
|
|
C15
|
D:OX0301
|
4.5
|
41.1
|
1.0
|
|
CA
|
D:LEU79
|
4.5
|
45.5
|
1.0
|
|
CB
|
D:ARG78
|
4.6
|
42.3
|
1.0
|
|
HB1
|
C:ALA101
|
4.6
|
37.7
|
1.0
|
|
C
|
D:ARG78
|
4.6
|
38.7
|
1.0
|
|
HB2
|
C:LEU104
|
4.6
|
39.3
|
1.0
|
|
CD1
|
D:ILE75
|
4.7
|
43.9
|
1.0
|
|
O
|
D:ILE75
|
4.7
|
37.8
|
1.0
|
|
HG2
|
D:GLU82
|
4.7
|
61.2
|
1.0
|
|
H161
|
D:OX0301
|
4.7
|
51.2
|
1.0
|
|
H211
|
D:OX0301
|
4.8
|
49.9
|
1.0
|
|
CG
|
D:GLU82
|
4.8
|
51.0
|
1.0
|
|
O
|
D:ARG78
|
4.9
|
41.5
|
1.0
|
|
HA
|
C:ALA101
|
4.9
|
35.3
|
1.0
|
|
C
|
C:LEU104
|
4.9
|
35.1
|
1.0
|
|
C
|
C:ALA101
|
5.0
|
34.0
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 5 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl301
b:65.4
occ:1.00
|
CL19
|
E:OX0301
|
0.0
|
65.4
|
1.0
|
|
C18
|
E:OX0301
|
1.8
|
41.4
|
1.0
|
|
C20
|
E:OX0301
|
2.7
|
39.0
|
1.0
|
|
C17
|
E:OX0301
|
2.7
|
43.0
|
1.0
|
|
HD23
|
E:LEU79
|
2.8
|
49.2
|
1.0
|
|
H201
|
E:OX0301
|
2.8
|
46.9
|
1.0
|
|
H171
|
E:OX0301
|
2.8
|
51.7
|
1.0
|
|
HB2
|
D:PHE105
|
2.9
|
36.9
|
1.0
|
|
HG3
|
E:ARG78
|
3.2
|
55.3
|
1.0
|
|
HA
|
D:PHE105
|
3.4
|
33.2
|
1.0
|
|
HD21
|
E:LEU79
|
3.6
|
49.2
|
1.0
|
|
CD2
|
E:LEU79
|
3.6
|
40.9
|
1.0
|
|
HD1
|
D:PHE105
|
3.6
|
48.5
|
1.0
|
|
HG2
|
E:ARG78
|
3.7
|
55.3
|
1.0
|
|
CB
|
D:PHE105
|
3.7
|
30.7
|
1.0
|
|
HA
|
E:LEU79
|
3.8
|
53.3
|
1.0
|
|
CG
|
E:ARG78
|
3.9
|
46.0
|
1.0
|
|
CA
|
D:PHE105
|
3.9
|
27.6
|
1.0
|
|
HG
|
E:LEU79
|
4.0
|
53.8
|
1.0
|
|
C16
|
E:OX0301
|
4.0
|
36.5
|
1.0
|
|
C21
|
E:OX0301
|
4.0
|
38.8
|
1.0
|
|
HG3
|
E:GLU82
|
4.1
|
56.5
|
1.0
|
|
H
|
D:PHE105
|
4.1
|
35.5
|
1.0
|
|
N
|
D:PHE105
|
4.1
|
29.5
|
1.0
|
|
HB3
|
E:ARG78
|
4.2
|
56.4
|
1.0
|
|
HG13
|
E:ILE75
|
4.2
|
50.5
|
1.0
|
|
HD22
|
E:LEU79
|
4.3
|
49.2
|
1.0
|
|
O
|
D:ALA101
|
4.3
|
31.1
|
1.0
|
|
CG
|
E:LEU79
|
4.3
|
44.8
|
1.0
|
|
CD1
|
D:PHE105
|
4.3
|
40.3
|
1.0
|
|
HB3
|
D:PHE105
|
4.4
|
36.9
|
1.0
|
|
HG2
|
E:GLU82
|
4.4
|
56.5
|
1.0
|
|
N
|
E:LEU79
|
4.4
|
40.5
|
1.0
|
|
HD11
|
E:ILE75
|
4.4
|
48.9
|
1.0
|
|
CA
|
E:LEU79
|
4.5
|
44.4
|
1.0
|
|
C15
|
E:OX0301
|
4.5
|
36.3
|
1.0
|
|
CG
|
D:PHE105
|
4.5
|
31.8
|
1.0
|
|
CB
|
E:ARG78
|
4.6
|
47.0
|
1.0
|
|
C
|
E:ARG78
|
4.6
|
34.3
|
1.0
|
|
H
|
E:LEU79
|
4.7
|
48.7
|
1.0
|
|
HH11
|
E:ARG78
|
4.7
|
59.1
|
1.0
|
|
NH1
|
E:ARG78
|
4.7
|
49.2
|
1.0
|
|
O
|
E:ARG78
|
4.7
|
39.9
|
1.0
|
|
CG
|
E:GLU82
|
4.7
|
47.0
|
1.0
|
|
HG12
|
E:ILE75
|
4.7
|
50.5
|
1.0
|
|
H211
|
E:OX0301
|
4.8
|
46.6
|
1.0
|
|
H161
|
E:OX0301
|
4.8
|
43.9
|
1.0
|
|
HB2
|
D:LEU104
|
4.8
|
38.2
|
1.0
|
|
C
|
D:LEU104
|
4.8
|
29.4
|
1.0
|
|
CG1
|
E:ILE75
|
4.9
|
42.0
|
1.0
|
|
HH12
|
E:ARG78
|
4.9
|
59.1
|
1.0
|
|
CZ
|
E:ARG78
|
4.9
|
56.3
|
1.0
|
|
CB
|
E:LEU79
|
4.9
|
37.8
|
1.0
|
|
O
|
E:ILE75
|
4.9
|
38.4
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 6 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl301
b:64.2
occ:1.00
|
CL19
|
F:OX0301
|
0.0
|
64.2
|
1.0
|
|
C18
|
F:OX0301
|
1.8
|
48.0
|
1.0
|
|
C17
|
F:OX0301
|
2.7
|
40.0
|
1.0
|
|
C20
|
F:OX0301
|
2.8
|
45.7
|
1.0
|
|
H171
|
F:OX0301
|
2.8
|
48.1
|
1.0
|
|
H201
|
F:OX0301
|
2.9
|
54.9
|
1.0
|
|
HD23
|
F:LEU79
|
3.0
|
41.1
|
1.0
|
|
HB2
|
E:PHE105
|
3.0
|
41.2
|
1.0
|
|
HG3
|
F:ARG78
|
3.1
|
54.3
|
1.0
|
|
HD1
|
E:PHE105
|
3.5
|
46.9
|
1.0
|
|
HG2
|
F:ARG78
|
3.6
|
54.3
|
1.0
|
|
HA
|
E:PHE105
|
3.6
|
39.8
|
1.0
|
|
HG
|
F:LEU79
|
3.7
|
61.3
|
1.0
|
|
CD2
|
F:LEU79
|
3.7
|
34.2
|
1.0
|
|
CG
|
F:ARG78
|
3.7
|
45.2
|
1.0
|
|
HD21
|
F:LEU79
|
3.7
|
41.1
|
1.0
|
|
HA
|
F:LEU79
|
3.8
|
50.0
|
1.0
|
|
HB3
|
F:ARG78
|
3.8
|
54.7
|
1.0
|
|
CB
|
E:PHE105
|
3.9
|
34.3
|
1.0
|
|
HG12
|
F:ILE75
|
3.9
|
44.1
|
1.0
|
|
HG13
|
F:ILE75
|
4.0
|
44.1
|
1.0
|
|
C16
|
F:OX0301
|
4.0
|
48.8
|
1.0
|
|
HG3
|
F:GLU82
|
4.0
|
55.8
|
1.0
|
|
HD11
|
F:ILE75
|
4.0
|
49.6
|
1.0
|
|
C21
|
F:OX0301
|
4.1
|
45.0
|
1.0
|
|
CA
|
E:PHE105
|
4.1
|
33.1
|
1.0
|
|
O
|
E:ALA101
|
4.2
|
33.3
|
1.0
|
|
CG
|
F:LEU79
|
4.2
|
51.0
|
1.0
|
|
CD1
|
E:PHE105
|
4.2
|
39.0
|
1.0
|
|
N
|
F:LEU79
|
4.3
|
41.9
|
1.0
|
|
CB
|
F:ARG78
|
4.3
|
45.5
|
1.0
|
|
H
|
E:PHE105
|
4.3
|
41.7
|
1.0
|
|
CG1
|
F:ILE75
|
4.4
|
36.7
|
1.0
|
|
N
|
E:PHE105
|
4.4
|
34.7
|
1.0
|
|
CA
|
F:LEU79
|
4.4
|
41.6
|
1.0
|
|
H
|
F:LEU79
|
4.4
|
50.4
|
1.0
|
|
C
|
F:ARG78
|
4.4
|
43.5
|
1.0
|
|
HD22
|
F:LEU79
|
4.5
|
41.1
|
1.0
|
|
CG
|
E:PHE105
|
4.5
|
37.9
|
1.0
|
|
C15
|
F:OX0301
|
4.5
|
49.0
|
1.0
|
|
HB3
|
E:PHE105
|
4.6
|
41.2
|
1.0
|
|
O
|
F:ILE75
|
4.6
|
38.2
|
1.0
|
|
HG2
|
F:GLU82
|
4.6
|
55.8
|
1.0
|
|
O
|
F:ARG78
|
4.7
|
40.3
|
1.0
|
|
HB1
|
E:ALA101
|
4.7
|
50.7
|
1.0
|
|
CD1
|
F:ILE75
|
4.7
|
41.3
|
1.0
|
|
H161
|
F:OX0301
|
4.7
|
58.6
|
1.0
|
|
CG
|
F:GLU82
|
4.8
|
46.4
|
1.0
|
|
H211
|
F:OX0301
|
4.8
|
54.1
|
1.0
|
|
CB
|
F:LEU79
|
4.8
|
38.9
|
1.0
|
|
HB2
|
E:LEU104
|
4.9
|
38.8
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 7uvm
Go back to
Chlorine Binding Sites List in 7uvm
Chlorine binding site 7 out
of 7 in the Crystal Structure of Human Clpp Protease in Complex with Tr-27
 Mono view
 Stereo pair view
|
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Human Clpp Protease in Complex with Tr-27 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cl301
b:68.9
occ:1.00
|
CL19
|
G:OX0301
|
0.0
|
68.9
|
1.0
|
|
C18
|
G:OX0301
|
1.8
|
47.0
|
1.0
|
|
HD23
|
G:LEU79
|
2.6
|
61.6
|
1.0
|
|
C20
|
G:OX0301
|
2.7
|
45.0
|
1.0
|
|
HB2
|
F:PHE105
|
2.8
|
42.4
|
1.0
|
|
C17
|
G:OX0301
|
2.8
|
42.1
|
1.0
|
|
H201
|
G:OX0301
|
2.8
|
54.1
|
1.0
|
|
H171
|
G:OX0301
|
2.9
|
50.6
|
1.0
|
|
HG3
|
G:ARG78
|
3.2
|
60.8
|
1.0
|
|
HA
|
F:PHE105
|
3.3
|
40.9
|
1.0
|
|
HD21
|
G:LEU79
|
3.4
|
61.6
|
1.0
|
|
CD2
|
G:LEU79
|
3.4
|
51.3
|
1.0
|
|
HD1
|
F:PHE105
|
3.5
|
44.9
|
1.0
|
|
CB
|
F:PHE105
|
3.6
|
35.2
|
1.0
|
|
CA
|
F:PHE105
|
3.8
|
34.0
|
1.0
|
|
HG
|
G:LEU79
|
3.9
|
51.1
|
1.0
|
|
HA
|
G:LEU79
|
3.9
|
49.1
|
1.0
|
|
CG
|
G:ARG78
|
4.0
|
50.6
|
1.0
|
|
HG2
|
G:ARG78
|
4.0
|
60.8
|
1.0
|
|
C21
|
G:OX0301
|
4.0
|
40.1
|
1.0
|
|
C16
|
G:OX0301
|
4.1
|
42.3
|
1.0
|
|
HD22
|
G:LEU79
|
4.1
|
61.6
|
1.0
|
|
N
|
F:PHE105
|
4.1
|
33.4
|
1.0
|
|
H
|
F:PHE105
|
4.1
|
40.2
|
1.0
|
|
HG3
|
G:GLU82
|
4.1
|
63.3
|
1.0
|
|
HB3
|
G:ARG78
|
4.2
|
57.6
|
1.0
|
|
O
|
F:ALA101
|
4.2
|
31.5
|
1.0
|
|
CG
|
G:LEU79
|
4.2
|
42.5
|
1.0
|
|
CD1
|
F:PHE105
|
4.3
|
37.4
|
1.0
|
|
HG13
|
G:ILE75
|
4.3
|
45.2
|
1.0
|
|
HB3
|
F:PHE105
|
4.3
|
42.4
|
1.0
|
|
CG
|
F:PHE105
|
4.4
|
33.5
|
1.0
|
|
HG12
|
G:ILE75
|
4.5
|
45.2
|
1.0
|
|
C15
|
G:OX0301
|
4.5
|
41.5
|
1.0
|
|
HD11
|
G:ILE75
|
4.5
|
53.7
|
1.0
|
|
N
|
G:LEU79
|
4.6
|
38.1
|
1.0
|
|
CA
|
G:LEU79
|
4.6
|
40.8
|
1.0
|
|
CB
|
G:ARG78
|
4.6
|
47.9
|
1.0
|
|
HG2
|
G:GLU82
|
4.6
|
63.3
|
1.0
|
|
HB2
|
F:LEU104
|
4.7
|
42.4
|
1.0
|
|
C
|
G:ARG78
|
4.7
|
42.6
|
1.0
|
|
H211
|
G:OX0301
|
4.7
|
48.2
|
1.0
|
|
H
|
G:LEU79
|
4.7
|
45.8
|
1.0
|
|
C
|
F:LEU104
|
4.8
|
35.6
|
1.0
|
|
CG1
|
G:ILE75
|
4.8
|
37.6
|
1.0
|
|
H161
|
G:OX0301
|
4.8
|
50.9
|
1.0
|
|
CG
|
G:GLU82
|
4.8
|
52.7
|
1.0
|
|
NE
|
G:ARG78
|
4.9
|
57.9
|
1.0
|
|
O
|
G:ARG78
|
4.9
|
37.2
|
1.0
|
|
O
|
G:ILE75
|
4.9
|
40.0
|
1.0
|
|
HE
|
G:ARG78
|
4.9
|
69.6
|
1.0
|
|
HB3
|
F:LEU104
|
4.9
|
42.4
|
1.0
|
|
HB1
|
F:ALA101
|
5.0
|
42.1
|
1.0
|
|
CB
|
G:LEU79
|
5.0
|
41.3
|
1.0
|
|
Reference:
M.F.Mabanglo,
K.S.Wong,
M.M.Barghash,
E.Leung,
S.H.W.Chuang,
A.Ardalan,
E.M.Majaesic,
C.J.Wong,
S.Zhang,
H.Lang,
D.S.Karanewsky,
A.A.Iwanowicz,
L.M.Graves,
E.J.Iwanowicz,
A.C.Gingras,
W.A.Houry.
Potent Clpp Agonists with Anticancer Properties Bind with Improved Structural Complementarity and Alter the Mitochondrial N-Terminome. Structure 2022.
ISSN: ISSN 0969-2126
PubMed: 36586405
DOI: 10.1016/J.STR.2022.12.002
Page generated: Tue Jul 30 05:11:38 2024
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