Chlorine in PDB 7vpe: Falcilysin in Complex with A1
Protein crystallography data
The structure of Falcilysin in Complex with A1, PDB code: 7vpe
was solved by
J.Q.Lin,
A.El Sahili,
J.Lescar,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.92 /
1.62
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.663,
106.157,
126.122,
90,
90,
90
|
R / Rfree (%)
|
18 /
19.6
|
Other elements in 7vpe:
The structure of Falcilysin in Complex with A1 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Falcilysin in Complex with A1
(pdb code 7vpe). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Falcilysin in Complex with A1, PDB code: 7vpe:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 7vpe
Go back to
Chlorine Binding Sites List in 7vpe
Chlorine binding site 1 out
of 6 in the Falcilysin in Complex with A1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Falcilysin in Complex with A1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1204
b:29.1
occ:1.00
|
O
|
A:HOH2139
|
2.5
|
39.7
|
1.0
|
OG
|
A:SER123
|
3.2
|
26.7
|
1.0
|
N
|
A:HIS122
|
3.2
|
24.0
|
1.0
|
O
|
A:HOH1695
|
3.2
|
24.3
|
1.0
|
N
|
A:SER123
|
3.7
|
22.7
|
1.0
|
CB
|
A:SER123
|
3.9
|
24.9
|
1.0
|
CA
|
A:HIS122
|
4.0
|
25.0
|
1.0
|
CD1
|
A:ILE127
|
4.0
|
24.0
|
1.0
|
C
|
A:HIS122
|
4.0
|
27.2
|
1.0
|
CA
|
A:THR121
|
4.0
|
18.6
|
1.0
|
C
|
A:THR121
|
4.1
|
21.8
|
1.0
|
CB
|
A:THR121
|
4.2
|
22.9
|
1.0
|
CB
|
A:HIS122
|
4.3
|
26.6
|
1.0
|
CA
|
A:SER123
|
4.3
|
25.1
|
1.0
|
CE2
|
A:PHE291
|
4.4
|
21.9
|
1.0
|
CD2
|
A:PHE291
|
4.6
|
21.6
|
1.0
|
O
|
A:SER123
|
4.7
|
23.9
|
1.0
|
CG1
|
A:ILE127
|
4.7
|
25.0
|
1.0
|
C
|
A:SER123
|
4.8
|
27.7
|
1.0
|
O
|
A:HIS122
|
4.8
|
28.8
|
1.0
|
CG2
|
A:THR121
|
4.8
|
24.5
|
1.0
|
CD2
|
A:HIS122
|
5.0
|
29.3
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 7vpe
Go back to
Chlorine Binding Sites List in 7vpe
Chlorine binding site 2 out
of 6 in the Falcilysin in Complex with A1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Falcilysin in Complex with A1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1205
b:29.1
occ:1.00
|
NE
|
A:ARG1067
|
3.1
|
44.6
|
1.0
|
N
|
A:ARG1067
|
3.2
|
23.8
|
1.0
|
NH2
|
A:ARG1067
|
3.2
|
32.2
|
1.0
|
O
|
A:HOH1981
|
3.4
|
30.5
|
1.0
|
N
|
A:TYR868
|
3.4
|
22.0
|
1.0
|
CD2
|
A:TYR868
|
3.5
|
25.6
|
1.0
|
CZ
|
A:ARG1067
|
3.6
|
44.7
|
1.0
|
CB
|
A:SER1008
|
3.7
|
23.8
|
1.0
|
N
|
A:GLY867
|
3.8
|
22.1
|
1.0
|
CB
|
A:TYR868
|
3.9
|
24.5
|
1.0
|
CA
|
A:ARG1067
|
4.0
|
26.7
|
1.0
|
O
|
A:ASN1007
|
4.0
|
23.6
|
1.0
|
CA
|
A:ALA1066
|
4.1
|
22.6
|
1.0
|
C
|
A:ALA1066
|
4.1
|
25.4
|
1.0
|
CA
|
A:GLY867
|
4.2
|
20.4
|
1.0
|
CG
|
A:TYR868
|
4.2
|
24.5
|
1.0
|
CG
|
A:ARG1067
|
4.2
|
33.4
|
1.0
|
CD
|
A:ARG1067
|
4.2
|
39.8
|
1.0
|
C
|
A:GLY867
|
4.2
|
20.4
|
1.0
|
CA
|
A:TYR868
|
4.2
|
23.2
|
1.0
|
OG
|
A:SER1008
|
4.3
|
23.4
|
1.0
|
CE2
|
A:TYR868
|
4.5
|
31.2
|
1.0
|
CB
|
A:ALA1066
|
4.5
|
23.8
|
1.0
|
O
|
A:HOH1706
|
4.5
|
30.5
|
1.0
|
CA
|
A:SER1008
|
4.6
|
22.2
|
1.0
|
C
|
A:LYS866
|
4.6
|
24.5
|
1.0
|
C
|
A:ASN1007
|
4.7
|
22.4
|
1.0
|
CB
|
A:ARG1067
|
4.7
|
27.7
|
1.0
|
N
|
A:SER1008
|
4.8
|
22.6
|
1.0
|
NH1
|
A:ARG1067
|
4.9
|
37.1
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 7vpe
Go back to
Chlorine Binding Sites List in 7vpe
Chlorine binding site 3 out
of 6 in the Falcilysin in Complex with A1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Falcilysin in Complex with A1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1206
b:30.6
occ:1.00
|
O
|
A:HOH1797
|
3.1
|
23.6
|
1.0
|
ND2
|
A:ASN857
|
3.1
|
25.2
|
1.0
|
ND2
|
A:ASN442
|
3.3
|
29.6
|
1.0
|
CE
|
A:LYS466
|
3.5
|
32.8
|
1.0
|
CB
|
A:ASN857
|
3.7
|
22.1
|
1.0
|
O
|
A:HOH2044
|
3.7
|
39.6
|
1.0
|
NZ
|
A:LYS466
|
3.8
|
35.5
|
1.0
|
CG
|
A:ASN857
|
3.9
|
22.3
|
1.0
|
CA
|
A:ASN857
|
4.0
|
20.4
|
1.0
|
CB
|
A:ASN442
|
4.0
|
18.6
|
1.0
|
CG
|
A:ASN442
|
4.1
|
24.5
|
1.0
|
CA
|
A:GLY464
|
4.2
|
23.4
|
1.0
|
N
|
A:ASN857
|
4.4
|
17.4
|
1.0
|
O
|
A:HOH2233
|
4.5
|
28.7
|
1.0
|
O
|
A:HOH2013
|
4.6
|
42.5
|
1.0
|
OE1
|
A:GLU362
|
4.8
|
34.9
|
1.0
|
O
|
A:GLY464
|
4.8
|
21.8
|
1.0
|
CD
|
A:LYS466
|
4.9
|
28.1
|
1.0
|
CG2
|
A:ILE856
|
4.9
|
19.6
|
1.0
|
O
|
A:LYS853
|
4.9
|
19.6
|
1.0
|
C
|
A:GLY464
|
5.0
|
21.4
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 7vpe
Go back to
Chlorine Binding Sites List in 7vpe
Chlorine binding site 4 out
of 6 in the Falcilysin in Complex with A1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Falcilysin in Complex with A1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1207
b:27.3
occ:1.00
|
O
|
A:HOH2169
|
3.1
|
22.7
|
1.0
|
O
|
A:HOH1662
|
3.2
|
26.8
|
1.0
|
NH2
|
A:ARG783
|
3.2
|
21.5
|
1.0
|
NH1
|
A:ARG783
|
3.3
|
19.7
|
1.0
|
CD
|
A:PRO427
|
3.5
|
21.9
|
1.0
|
CZ
|
A:ARG783
|
3.7
|
19.9
|
1.0
|
CB
|
A:THR426
|
3.8
|
18.0
|
1.0
|
CG2
|
A:THR426
|
3.9
|
19.8
|
1.0
|
CA
|
A:THR426
|
4.2
|
17.6
|
1.0
|
O
|
A:HOH2311
|
4.5
|
41.0
|
1.0
|
CG
|
A:PRO427
|
4.5
|
20.0
|
1.0
|
O
|
A:HOH2142
|
4.6
|
34.7
|
1.0
|
OE1
|
A:GLU768
|
4.6
|
22.1
|
1.0
|
N
|
A:PRO427
|
4.6
|
20.1
|
1.0
|
O
|
A:HOH1559
|
4.7
|
22.7
|
1.0
|
CG1
|
A:VAL780
|
4.7
|
18.8
|
1.0
|
CB
|
A:GLU768
|
4.7
|
19.2
|
1.0
|
O
|
A:HOH2333
|
4.8
|
36.0
|
1.0
|
O
|
A:HOH1432
|
4.9
|
21.9
|
1.0
|
C
|
A:THR426
|
4.9
|
17.9
|
1.0
|
OG1
|
A:THR426
|
5.0
|
18.4
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 7vpe
Go back to
Chlorine Binding Sites List in 7vpe
Chlorine binding site 5 out
of 6 in the Falcilysin in Complex with A1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Falcilysin in Complex with A1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1208
b:38.9
occ:1.00
|
NE
|
A:ARG854
|
3.2
|
23.9
|
1.0
|
NZ
|
A:LYS855
|
3.3
|
28.8
|
1.0
|
NH2
|
A:ARG854
|
3.4
|
22.8
|
1.0
|
O
|
A:HOH2226
|
3.6
|
40.0
|
1.0
|
CZ
|
A:ARG854
|
3.7
|
21.2
|
1.0
|
CE
|
A:LYS855
|
3.9
|
23.3
|
1.0
|
CG
|
A:LYS855
|
3.9
|
22.9
|
1.0
|
CG2
|
A:THR764
|
4.2
|
19.8
|
1.0
|
CD
|
A:ARG854
|
4.3
|
24.3
|
1.0
|
CG
|
A:ARG854
|
4.3
|
20.2
|
1.0
|
CD
|
A:LYS855
|
4.5
|
24.2
|
1.0
|
OG1
|
A:THR764
|
4.6
|
23.8
|
1.0
|
O
|
A:HOH1746
|
4.9
|
34.2
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 7vpe
Go back to
Chlorine Binding Sites List in 7vpe
Chlorine binding site 6 out
of 6 in the Falcilysin in Complex with A1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Falcilysin in Complex with A1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1209
b:31.2
occ:1.00
|
O
|
A:HOH1332
|
3.3
|
32.1
|
1.0
|
N
|
A:SER273
|
3.4
|
20.4
|
1.0
|
ND2
|
A:ASN166
|
3.4
|
21.5
|
1.0
|
OG
|
A:SER273
|
3.5
|
27.8
|
1.0
|
O
|
A:ASN271
|
3.5
|
26.8
|
1.0
|
O
|
A:HOH2103
|
3.6
|
36.5
|
1.0
|
CB
|
A:ASN166
|
3.8
|
17.8
|
1.0
|
CA
|
A:ASN166
|
3.8
|
16.8
|
1.0
|
CA
|
A:ASN272
|
3.9
|
25.1
|
1.0
|
CG
|
A:ASN166
|
4.1
|
19.2
|
1.0
|
C
|
A:ASN272
|
4.1
|
23.7
|
1.0
|
CB
|
A:SER273
|
4.1
|
23.6
|
1.0
|
OD1
|
A:ASN272
|
4.2
|
27.2
|
1.0
|
O
|
A:HOH1931
|
4.2
|
33.5
|
1.0
|
CE1
|
A:HIS257
|
4.2
|
34.1
|
1.0
|
CA
|
A:SER273
|
4.3
|
20.0
|
1.0
|
N
|
A:ASN166
|
4.4
|
18.1
|
1.0
|
O
|
A:HOH1788
|
4.4
|
42.9
|
1.0
|
C
|
A:ASN271
|
4.5
|
28.4
|
1.0
|
ND1
|
A:HIS257
|
4.6
|
37.5
|
1.0
|
N
|
A:ASN272
|
4.7
|
23.0
|
1.0
|
N
|
A:GLY274
|
4.7
|
23.7
|
1.0
|
CG
|
A:ASN272
|
4.8
|
32.4
|
1.0
|
CB
|
A:ASN272
|
4.9
|
27.5
|
1.0
|
CE2
|
A:TYR256
|
4.9
|
31.5
|
1.0
|
|
Reference:
J.Q.Lin,
J.Lescar.
Title Is Not Available Yet As We Are Preparing the Manuscript. Will Update Again Once the Paper Is Out. To Be Published.
Page generated: Tue Jul 30 05:25:42 2024
|