Chlorine in PDB 7vtv: Crystal Structure of PDE8A Catalytic Domain in Complex with 15

Enzymatic activity of Crystal Structure of PDE8A Catalytic Domain in Complex with 15

All present enzymatic activity of Crystal Structure of PDE8A Catalytic Domain in Complex with 15:
3.1.4.53;

Protein crystallography data

The structure of Crystal Structure of PDE8A Catalytic Domain in Complex with 15, PDB code: 7vtv was solved by X.-N.Wu, Q.Zhou, Y.-D.Huang, Z.Li, Y.Wu, H.-B.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.17 / 2.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 75.986, 131.724, 101.456, 90, 90, 90
R / Rfree (%) 28.2 / 32.4

Other elements in 7vtv:

The structure of Crystal Structure of PDE8A Catalytic Domain in Complex with 15 also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Magnesium (Mg) 1 atom
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of PDE8A Catalytic Domain in Complex with 15 (pdb code 7vtv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of PDE8A Catalytic Domain in Complex with 15, PDB code: 7vtv:

Chlorine binding site 1 out of 1 in 7vtv

Go back to Chlorine Binding Sites List in 7vtv
Chlorine binding site 1 out of 1 in the Crystal Structure of PDE8A Catalytic Domain in Complex with 15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of PDE8A Catalytic Domain in Complex with 15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:27.3
occ:1.00
CL2 A:7ZZ903 0.0 27.3 1.0
C2 A:7ZZ903 1.7 27.4 1.0
N3 A:7ZZ903 2.6 27.6 1.0
N1 A:7ZZ903 2.7 27.6 1.0
FBA A:7ZZ903 3.4 29.3 1.0
FAZ A:7ZZ903 3.5 29.7 1.0
CZ A:PHE767 3.6 35.9 1.0
C4 A:7ZZ903 3.9 27.8 1.0
CD1 A:PHE781 3.9 23.4 1.0
C6 A:7ZZ903 3.9 27.4 1.0
CE2 A:PHE767 4.0 36.0 1.0
CAY A:7ZZ903 4.1 29.5 1.0
CE2 A:TYR748 4.1 30.9 1.0
CG A:PHE781 4.1 23.4 1.0
O A:HOH1023 4.2 28.1 1.0
CB A:PHE781 4.2 23.5 1.0
C5 A:7ZZ903 4.4 27.5 1.0
CE1 A:PHE767 4.4 35.9 1.0
CE1 A:PHE781 4.5 23.2 1.0
CD2 A:TYR748 4.5 30.9 1.0
CAM A:7ZZ903 4.8 29.3 1.0
CD2 A:PHE781 4.8 23.2 1.0
NE2 A:GLN778 5.0 24.4 1.0
N6 A:7ZZ903 5.0 27.6 1.0

Reference:

X.-N.Wu, Q.Zhou, Y.-D.Huang, Z.Li, Y.Wu, H.-B.Luo. Structure-Based Discovery of Orally Efficient PDE8 Inhibitors For the Treatment of Vascular Dementia To Be Published.
Page generated: Tue Apr 4 22:09:14 2023

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