Chlorine in PDB 7wak: Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp

Enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp

All present enzymatic activity of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp:
6.1.1.17;

Protein crystallography data

The structure of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp, PDB code: 7wak was solved by V.Sharma, Y.Manickam, P.Babbar, A.Sharma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.65 / 2.78
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.21, 46.47, 94.92, 90, 112.05, 90
R / Rfree (%) 19.5 / 24.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp (pdb code 7wak). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp, PDB code: 7wak:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 1 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1003

b:61.9
occ:1.00
 OG A:SER538 2.8 78.6 1.0
N A:SER538 3.6 57.8 1.0
NZ A:LYS329 3.6 62.0 1.0
CB A:SER538 4.0 64.0 1.0
CB A:PHE537 4.2 49.3 1.0
CA A:SER538 4.4 61.0 1.0
CA A:PHE537 4.4 61.3 1.0
C A:PHE537 4.5 66.7 1.0
CE A:LYS329 4.7 57.3 1.0
O A:SER538 4.8 50.7 1.0

Chlorine binding site 2 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 2 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:92.7
occ:1.00
 NH2 A:ARG577 3.5 57.8 1.0
NH1 A:ARG577 3.6 64.7 1.0
OG A:SER563 3.9 75.5 1.0
CZ A:ARG577 4.0 59.1 1.0
CB A:SER563 4.5 87.1 1.0

Chlorine binding site 3 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 3 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1005

b:77.4
occ:1.00
 ND1 A:HIS742 2.8 95.2 1.0
CE1 A:HIS742 3.6 91.5 1.0
N A:HIS742 3.8 71.0 1.0
NZ A:LYS544 3.8 104.8 1.0
CG A:HIS742 3.9 91.1 1.0
OD1 A:ASP741 3.9 93.8 1.0
CB A:ASP741 4.0 85.4 1.0
CG A:ASP741 4.1 96.5 1.0
CB A:HIS742 4.2 80.3 1.0
CE A:LYS544 4.5 101.9 1.0
CA A:ASP741 4.5 74.9 1.0
CA A:HIS742 4.6 70.9 1.0
C A:ASP741 4.7 68.2 1.0
NE2 A:HIS742 4.8 88.8 1.0
CD2 A:HIS742 5.0 83.6 1.0

Chlorine binding site 4 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 4 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1006

b:78.2
occ:1.00
 NZ A:LYS551 2.6 101.9 1.0
OG A:SER548 2.8 102.6 1.0
CG2 A:VAL546 3.6 106.0 1.0
N A:SER548 3.9 76.0 1.0
N A:MET547 3.9 70.4 1.0
CE A:LYS551 4.1 105.0 1.0
CB A:SER548 4.1 90.6 1.0
CA A:VAL546 4.2 84.4 1.0
CB A:VAL546 4.4 84.7 1.0
CA A:SER548 4.6 81.0 1.0
C A:VAL546 4.6 79.3 1.0
CD A:LYS551 4.7 105.5 1.0
O A:THR545 4.8 88.7 1.0
C A:MET547 4.8 70.9 1.0
CA A:MET547 4.9 63.9 1.0

Chlorine binding site 5 out of 5 in 7wak

Go back to Chlorine Binding Sites List in 7wak
Chlorine binding site 5 out of 5 in the Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Glutamyl-Trna Synthetase From Plasmodium Falciparum (Pfers) in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1007

b:101.7
occ:1.00
 CE A:LYS329 3.6 57.3 1.0
O A:ILE589 3.8 82.8 1.0
NZ A:LYS329 3.8 62.0 1.0
CB A:GLN592 4.2 92.6 1.0
CA A:ILE589 4.5 57.5 1.0
SD A:MET601 4.6 91.9 1.0
C A:ILE589 4.6 62.8 1.0
O A:PHE588 4.7 56.4 1.0
CD1 A:LEU540 4.7 55.5 1.0
C A:GLN592 4.7 92.9 1.0
CD A:LYS329 4.8 48.7 1.0

Reference:

V.K.Sharma, J.Chhibber-Goel, M.Yogavel, A.Sharma. Structural Characterization of Glutamyl-Trna Synthetase (Glurs) From Plasmodium Falciparum. Mol.Biochem.Parasitol. V. 253 11530 2022.
ISSN: ISSN 0166-6851
PubMed: 36370911
DOI: 10.1016/J.MOLBIOPARA.2022.111530
Page generated: Tue Apr 4 22:13:06 2023

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