Chlorine in PDB 7ziz: X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5)

Enzymatic activity of X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5)

All present enzymatic activity of X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5):
3.8.1.5;

Protein crystallography data

The structure of X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5), PDB code: 7ziz was solved by M.Tarnawski, J.Kompa, K.Johnsson, J.Hiblot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.35 / 1.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.83, 88.71, 44.2, 90, 90, 90
R / Rfree (%) 16.9 / 19.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5) (pdb code 7ziz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5), PDB code: 7ziz:

Chlorine binding site 1 out of 1 in 7ziz

Go back to Chlorine Binding Sites List in 7ziz
Chlorine binding site 1 out of 1 in the X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of the Dead Variant Haloalkane Dehalogenase HALOTAG7- D106A Bound to A Pentanol Tetramethylrhodamine Ligand (Tmr-HY5) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:11.7
occ:1.00
 O2 A:IYL301 3.1 14.8 1.0
NE1 A:TRP107 3.3 11.3 1.0
ND2 A:ASN41 3.4 11.6 1.0
N A:PRO206 3.5 11.9 1.0
CA A:PRO206 3.5 9.9 1.0
CD1 A:TRP107 3.6 10.6 1.0
CD A:PRO206 3.7 11.9 1.0
CZ A:PHE168 3.7 11.8 1.0
C A:PHE205 3.7 11.6 1.0
CB A:PRO206 3.8 12.6 1.0
C21 A:IYL301 3.9 21.0 1.0
CB A:PHE205 3.9 9.7 1.0
CD1 A:LEU209 3.9 13.3 1.0
CB A:ASN41 4.0 13.9 1.0
O A:PHE205 4.0 12.7 1.0
C20 A:IYL301 4.0 18.1 1.0
CG A:LEU209 4.2 12.7 1.0
CE2 A:PHE168 4.2 12.1 1.0
CG A:ASN41 4.2 11.5 1.0
CG A:PRO206 4.3 11.5 1.0
CD2 A:LEU209 4.3 14.2 1.0
CE2 A:PHE149 4.4 11.6 1.0
CA A:PHE205 4.5 11.4 1.0
CE2 A:TRP107 4.6 11.4 1.0
CE1 A:PHE168 4.6 14.7 1.0
O A:HOH468 4.9 12.9 1.0
CG A:PHE205 4.9 12.1 1.0
C A:PRO206 4.9 11.4 1.0
CG A:TRP107 5.0 9.1 1.0

Reference:

J.Kompa, J.Bruins, M.Glogger, J.Wilhelm, M.S.Frei, M.Tarnawski, E.D’Este, M.Heilemann, J.Hiblot, K.Johnsson. Exchangeable Halotag Ligands For Super-Resolution Fluorescence Microscopy J.Am.Chem.Soc. 2023.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.2C11969
Page generated: Tue Apr 4 22:24:50 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy