Chlorine in PDB 8afj: Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock

Protein crystallography data

The structure of Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock, PDB code: 8afj was solved by P.Van Der Linden, S.Engilberge, M.Atta, P.Carpentier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.62 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.276, 51.845, 78.183, 90, 90.63, 90
R / Rfree (%) 20 / 22.8

Other elements in 8afj:

The structure of Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Calcium (Ca) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock (pdb code 8afj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock, PDB code: 8afj:

Chlorine binding site 1 out of 1 in 8afj

Go back to Chlorine Binding Sites List in 8afj
Chlorine binding site 1 out of 1 in the Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:26.1
occ:1.00
H222 B:1PE305 2.8 48.5 1.0
NH1 A:ARG67 3.1 17.1 1.0
NH1 B:ARG67 3.2 23.1 1.0
C22 B:1PE305 3.7 40.0 1.0
H221 B:1PE305 3.7 48.5 1.0
CD B:ARG67 3.8 18.4 1.0
CD A:ARG67 3.9 17.1 1.0
CB A:ARG67 3.9 12.3 1.0
CB B:ARG67 4.0 16.2 1.0
O A:HOH499 4.1 36.1 1.0
CZ A:ARG67 4.2 20.7 1.0
CZ B:ARG67 4.3 20.9 1.0
CG A:ARG67 4.4 12.2 1.0
CG B:ARG67 4.4 15.9 1.0
H231 B:1PE305 4.4 55.3 1.0
OH3 B:1PE305 4.5 42.5 1.0
NE A:ARG67 4.5 16.1 1.0
NE B:ARG67 4.5 16.9 1.0
H121 B:1PE305 4.6 49.2 1.0
CG2 A:VAL71 4.6 18.5 1.0
C12 B:1PE305 4.7 40.7 1.0
O A:ARG67 4.7 16.2 1.0
CG2 B:VAL71 4.8 18.2 1.0
O B:ARG67 4.8 15.3 1.0
CA A:ARG67 4.9 17.1 1.0
CA B:ARG67 4.9 14.4 1.0
C A:ARG67 5.0 17.9 1.0
H122 B:1PE305 5.0 49.2 1.0
C23 B:1PE305 5.0 45.7 1.0

Reference:

P.Van Der Linden, S.Engilberge, M.Atta, P.Carpentier. Trna Modifying Enzyme Miae Soaked in Na-Dithionite in A Glovebox and Flash-Cooled Using A Miniature-Airlock To Be Published.
Page generated: Tue Apr 11 13:18:39 2023

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