Chlorine in PDB 8bt1: Ydat Transcription Regulator (Cii Functional Analog)

Protein crystallography data

The structure of Ydat Transcription Regulator (Cii Functional Analog), PDB code: 8bt1 was solved by M.Prolic-Kalinsek, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.37 / 2.40
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 45.57, 64.256, 63.91, 66.83, 89.36, 77.67
R / Rfree (%) 21.1 / 26.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ydat Transcription Regulator (Cii Functional Analog) (pdb code 8bt1). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ydat Transcription Regulator (Cii Functional Analog), PDB code: 8bt1:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8bt1

Go back to Chlorine Binding Sites List in 8bt1
Chlorine binding site 1 out of 2 in the Ydat Transcription Regulator (Cii Functional Analog)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ydat Transcription Regulator (Cii Functional Analog) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:45.6
occ:1.00
O A:HOH341 2.2 34.2 1.0
NH2 A:ARG109 3.0 34.9 1.0
CZ A:ARG109 4.3 33.9 1.0
NE A:ARG109 5.0 31.9 1.0

Chlorine binding site 2 out of 2 in 8bt1

Go back to Chlorine Binding Sites List in 8bt1
Chlorine binding site 2 out of 2 in the Ydat Transcription Regulator (Cii Functional Analog)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ydat Transcription Regulator (Cii Functional Analog) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:95.8
occ:1.00
CD2 C:HIS47 3.5 129.3 1.0
NE2 C:HIS47 4.1 127.4 1.0
CG C:HIS47 4.7 127.7 1.0

Reference:

M.Prolic-Kalinsek, A.N.Volkov, S.Hadzi, J.Van Dyck, D.Charlier, R.Loris. Structural and Thermodynamic Basis of Dna Binding By Ydat, A Functional Equivalent of the Cii Repressor in the Cryptic Prophage Cp-933P From Escherichia Coli O157:H7 To Be Published.
Page generated: Tue Apr 4 22:36:54 2023

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