Chlorine in PDB 8by5: C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex

The structure of C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex, PDB code: 8by5 was solved by R.Ketting, S.Falk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.06 / 1.73
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.115, 68.128, 55.171, 90, 103.03, 90
R / Rfree (%)	16.2 / 20.7

The structure of C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Chlorine atom in the C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex (pdb code 8by5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex, PDB code: 8by5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl402 b:18.9 occ:1.00 H A:ALA302 2.3 23.1 1.0 H A:LEU294 2.5 18.1 1.0 HD22 A:ASN293 2.6 36.7 1.0 HA A:ASN293 2.7 17.1 1.0 HD11 A:LEU247 3.0 30.6 1.0 HB2 A:ALA302 3.1 29.6 1.0 HG23 A:ILE300 3.1 24.1 1.0 HB3 A:ASN293 3.1 22.8 1.0 HB3 A:LEU301 3.1 21.7 1.0 N A:ALA302 3.2 19.3 1.0 HB3 A:ALA302 3.2 29.6 1.0 HG22 A:ILE300 3.3 24.1 1.0 N A:LEU294 3.3 15.1 1.0 ND2 A:ASN293 3.4 30.6 1.0 CA A:ASN293 3.5 14.3 1.0 HD12 A:LEU247 3.5 30.6 1.0 CB A:ALA302 3.5 24.7 1.0 H A:LEU301 3.6 21.1 1.0 O A:HOH595 3.6 34.2 1.0 CG2 A:ILE300 3.6 20.1 1.0 CB A:ASN293 3.6 19.0 1.0 CD1 A:LEU247 3.7 25.5 1.0 O A:LEU294 3.8 15.9 1.0 N A:LEU301 3.9 17.7 1.0 C A:ASN293 3.9 15.6 1.0 HG A:LEU247 3.9 28.9 1.0 CA A:ALA302 4.0 18.5 1.0 HG21 A:ILE300 4.0 24.1 1.0 HD21 A:ASN293 4.0 36.7 1.0 CG A:ASN293 4.0 29.3 1.0 CB A:LEU301 4.0 18.1 1.0 HD21 A:LEU247 4.1 27.7 1.0 C A:LEU301 4.2 20.1 1.0 CA A:LEU301 4.2 20.8 1.0 HB3 A:LEU294 4.3 17.7 1.0 CG A:LEU247 4.3 24.1 1.0 CA A:LEU294 4.4 14.0 1.0 HB1 A:ALA302 4.4 29.6 1.0 C A:LEU294 4.5 16.9 1.0 HD13 A:LEU247 4.5 30.6 1.0 HA A:ALA302 4.5 22.2 1.0 HB2 A:LEU301 4.5 21.7 1.0 HB2 A:ASN293 4.6 22.8 1.0 O A:ILE292 4.6 15.2 1.0 C A:ILE300 4.6 20.4 1.0 H A:ASP303 4.7 25.4 1.0 N A:ASN293 4.7 15.2 1.0 HD23 A:LEU301 4.7 23.1 1.0 CB A:LEU294 4.8 14.8 1.0 CD2 A:LEU247 4.8 23.1 1.0 HG A:LEU301 4.8 20.4 1.0 HB2 A:LEU294 4.9 17.7 1.0 HA A:ILE300 4.9 22.4 1.0 CB A:ILE300 4.9 18.1 1.0 CG A:LEU301 5.0 17.0 1.0 HD12 A:ILE292 5.0 24.6 1.0 O A:HOH596 5.0 34.0 1.0 HD1 A:PHE295 5.0 23.2 1.0

Chlorine binding site 2 out of 2 in the C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of C. Elegans Tofu-6 Etudor Tofu-1 Peptide Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:62.4 occ:1.00 HH11 A:ARG195 1.9 62.4 1.0 NH1 A:ARG195 2.7 52.1 1.0 HD3 A:ARG195 2.7 48.9 1.0 HD2 A:ARG195 2.8 48.9 1.0 O A:HOH504 3.0 41.6 1.0 HH12 A:ARG195 3.1 62.4 1.0 CD A:ARG195 3.2 40.8 1.0 HG13 A:ILE179 3.3 61.4 1.0 HG12 A:ILE179 3.5 61.4 1.0 HG21 A:VAL201 3.6 40.8 1.0 CZ A:ARG195 3.6 45.8 1.0 NE A:ARG195 3.8 50.1 1.0 CG1 A:ILE179 3.9 51.2 1.0 HB A:ILE179 4.0 63.1 1.0 HG22 A:VAL201 4.0 40.8 1.0 H A:ARG199 4.0 53.8 1.0 CG2 A:VAL201 4.1 34.0 1.0 O A:TYR176 4.1 47.7 1.0 HG23 A:VAL201 4.1 40.8 1.0 CB A:ILE179 4.5 52.6 1.0 HG3 A:ARG195 4.5 45.8 1.0 CG A:ARG195 4.5 38.2 1.0 O A:HOH610 4.6 48.5 1.0 HA A:PRO198 4.6 49.1 1.0 HE A:ARG195 4.7 60.1 1.0 H A:ILE179 4.7 48.7 1.0 HG21 A:ILE179 4.8 47.2 1.0 NH2 A:ARG195 4.8 47.8 1.0 N A:ARG199 4.9 44.9 1.0

N.Podvalnaya, A.W.Bronkhorst, R.Lichtenberger, S.Hellmann, E.Nischwitz, T.Falk, E.Karaulanov, F.Butter, S.Falk, R.Ketting. Pirna Processing By A Trimeric Schlafen-Domain-Containing Nuclease. To Be Published.