Chlorine in PDB 8c61: Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa

The structure of Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa, PDB code: 8c61 was solved by K.Wendrich, M.Gersch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.28 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	122.743, 126.559, 144.167, 90, 90, 90
R / Rfree (%)	20 / 24.3

The structure of Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa also contains other interesting chemical elements:

Zinc	(Zn)	12 atoms
Sodium	(Na)	2 atoms

The binding sites of Chlorine atom in the Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa (pdb code 8c61). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa, PDB code: 8c61:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl805 b:67.3 occ:1.00 O I:HOH115 3.1 60.4 1.0 NZ I:LYS33 3.1 63.6 1.0 N A:MET118 3.2 65.9 1.0 N I:THR14 3.2 63.8 1.0 CG A:MET118 3.5 66.8 1.0 CA A:ILE117 3.5 59.1 1.0 CA I:ILE13 3.5 69.5 1.0 ND2 A:ASN40 3.7 70.0 1.0 O A:GLY116 3.7 74.6 1.0 CG2 A:ILE117 3.7 63.6 1.0 CB I:ILE13 3.8 74.2 1.0 OG1 I:THR14 3.9 66.3 1.0 C A:ILE117 3.9 64.0 1.0 C I:ILE13 3.9 72.4 1.0 CG2 I:ILE13 4.1 71.4 1.0 CG2 I:THR14 4.1 75.7 1.0 CE I:LYS33 4.2 69.3 1.0 CB A:MET118 4.2 54.2 1.0 CB A:ILE117 4.2 68.8 1.0 CD I:LYS33 4.3 80.1 1.0 CA I:THR14 4.3 64.4 1.0 CA A:MET118 4.3 61.3 1.0 CB I:THR14 4.3 67.8 1.0 CD1 A:ILE117 4.4 74.2 1.0 O I:THR14 4.5 73.7 1.0 N A:ILE117 4.5 66.8 1.0 O I:THR12 4.5 68.2 1.0 C A:GLY116 4.6 73.3 1.0 CG A:ASN40 4.7 68.8 1.0 N I:ILE13 4.8 62.9 1.0 C I:THR14 4.9 70.5 1.0 CG1 A:ILE117 4.9 67.2 1.0 SD A:MET118 4.9 65.9 1.0

Chlorine binding site 2 out of 2 in the Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of USP54 in Complex with LYS63-Linked Diubiquitin-Pa within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl806 b:90.7 occ:1.00 O A:PHE277 4.0 74.2 1.0 O A:PHE278 4.0 58.7 1.0 O A:GLY274 4.2 66.5 1.0 OD1 A:ASP275 4.3 81.7 1.0 CA A:ASP275 4.4 69.8 1.0 O A:ASP275 4.6 69.1 1.0 C A:PHE278 4.7 64.8 1.0 OE1 A:GLN214 4.7 86.8 1.0 C A:ASP275 4.9 68.1 1.0 CA A:PHE278 4.9 59.5 1.0 CB A:ASP275 5.0 75.2 1.0

K.Wendrich, M.Gersch. Structure of USP54 in Complex with LYS63 Linked Diubiquitin-Pa To Be Published.