Chlorine in PDB 8dvc: Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24

The structure of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24, PDB code: 8dvc was solved by A.Arellano-Saab, T.Skarina, V.Yim, A.Savchenko, P.J.Stogios, P.Mccourt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.80 / 2.64
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	99.269, 352.967, 124.988, 90, 90, 90
R / Rfree (%)	18.5 / 24.2

The binding sites of Chlorine atom in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 (pdb code 8dvc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24, PDB code: 8dvc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl308 b:90.0 occ:1.00 N A:PHE64 3.4 54.3 1.0 OD1 A:ASP63 3.8 77.0 1.0 CB A:PHE64 3.8 54.9 1.0 O A:HOH424 3.9 66.4 1.0 CA A:PHE64 4.1 52.8 1.0 N A:GLU65 4.2 66.8 1.0 CD1 A:PHE64 4.2 66.0 1.0 C A:ASP63 4.3 59.5 1.0 CA A:ASP63 4.4 61.0 1.0 CG A:PHE64 4.5 69.5 1.0 C A:PHE64 4.7 65.9 1.0 CG A:ASP63 4.7 73.8 1.0 O A:TYR62 4.8 66.8 1.0

Chlorine binding site 2 out of 6 in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl309 b:109.4 occ:1.00 NE A:ARG262 3.2 78.4 1.0 CD A:ARG262 3.9 72.1 1.0 CZ A:ARG262 4.1 75.0 1.0 NH2 A:ARG262 4.2 72.6 1.0 CB A:PRO258 4.3 69.9 1.0 CG A:ARG262 4.7 80.2 1.0 O A:PRO258 4.7 61.4 1.0

Chlorine binding site 3 out of 6 in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl306 b:94.8 occ:1.00 NH1 B:ARG176 3.1 99.5 1.0 CD B:ARG176 4.0 87.3 1.0 ND2 B:ASN180 4.1 69.7 1.0 CZ B:ARG176 4.2 90.2 1.0 CG B:ARG176 4.4 84.9 1.0 NE B:ARG176 4.6 86.2 1.0 OD1 B:ASN180 5.0 86.2 1.0 CG B:ASN180 5.0 68.7 1.0

Chlorine binding site 4 out of 6 in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl305 b:92.8 occ:1.00 NH1 D:ARG176 2.9 81.9 1.0 ND2 D:ASN180 4.1 73.5 1.0 CZ D:ARG176 4.2 92.8 1.0 CD D:ARG176 4.3 88.5 1.0 NE D:ARG176 4.7 100.1 1.0 CG D:ARG176 4.8 77.5 1.0 OD1 D:ASN180 5.0 81.9 1.0 CG D:ASN180 5.0 69.8 1.0

Chlorine binding site 5 out of 6 in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl306 b:105.4 occ:1.00 CG D:GLN75 3.8 101.9 1.0 CB D:GLN75 3.8 75.5 1.0 CB E:PRO242 3.8 74.9 1.0 CA D:GLN75 4.1 67.2 1.0 OE1 D:GLN75 4.1 113.3 1.0 CG E:PRO242 4.2 71.7 1.0 CD D:GLN75 4.2 114.8 1.0 N D:GLN75 4.4 57.3 1.0 CD2 D:PHE107 4.8 67.1 1.0 O D:GLU71 4.8 71.0 1.0 CG D:GLU71 4.9 90.9 1.0 OG D:SER74 4.9 84.8 1.0 CG1 D:ILE78 5.0 69.6 1.0

Chlorine binding site 6 out of 6 in the Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Receptor SHHTL5 From Striga Hermonthica in Complex with Strigolactone Agonist GR24 within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl306 b:80.3 occ:1.00 O E:HOH438 3.7 79.7 1.0 N E:GLU169 3.8 83.4 1.0 CB E:SER168 4.1 89.5 1.0 CB E:GLU169 4.3 101.4 1.0 CA E:SER168 4.4 92.1 1.0 C E:SER168 4.6 93.5 1.0 CA E:GLU169 4.7 91.2 1.0

A.Arellano-Saab, T.Skarina, Z.Xu, C.S.P.Mcerlean, A.Savchenko, S.Lumba, P.J.Stogios, P.Mccourt. Structural Analysis of A Hormone-Bound Striga Strigolactone Receptor. Nat.Plants 2023.
ISSN: ESSN 2055-0278
PubMed: 37264151
DOI: 10.1038/S41477-023-01423-Y