Chlorine in PDB 8eqm: Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light

Other elements in 8eqm:

The structure of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light also contains other interesting chemical elements:

Magnesium (Mg) 70 atoms
Manganese (Mn) 8 atoms
Calcium (Ca) 2 atoms
Iron (Fe) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light (pdb code 8eqm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light, PDB code: 8eqm:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 1 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:42.9
occ:1.00
 CE D:LYS317 3.1 25.1 0.5
ND2 A:ASN182 3.3 20.8 1.0
NZ D:LYS317 3.4 25.1 0.5
CA A:HIS333 3.5 41.7 1.0
CB A:HIS333 3.5 41.7 1.0
O D:HOH541 3.7 30.6 1.0
N A:GLU334 3.8 51.5 1.0
O A:HOH562 3.8 32.3 1.0
CG2 A:VAL186 4.0 20.4 1.0
CB D:LYS317 4.1 25.1 0.5
CB D:LYS317 4.1 25.1 0.5
OD1 A:ASN182 4.1 20.8 1.0
CD1 D:LEU321 4.1 24.8 1.0
CG A:ASN182 4.1 20.8 1.0
C A:HIS333 4.1 41.7 1.0
CG D:LEU321 4.3 24.8 1.0
O D:LYS317 4.3 25.1 1.0
CD2 D:LEU321 4.4 24.8 1.0
CD D:LYS317 4.4 25.1 0.5
CG A:HIS333 4.5 41.7 1.0
O A:HOH546 4.6 38.5 1.0
N A:HIS333 4.7 41.7 1.0
CD D:LYS317 4.7 25.1 0.5
O A:MET332 4.8 37.1 1.0
CD2 A:HIS333 4.8 41.7 1.0
CG D:LYS317 4.8 25.1 0.5
NZ D:LYS317 4.9 25.1 0.5
C D:LYS317 4.9 25.1 1.0
CA D:LYS317 4.9 25.1 0.5
CA D:LYS317 4.9 25.1 0.5

Chlorine binding site 2 out of 4 in 8eqm

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Chlorine binding site 2 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:54.9
occ:1.00
 O C:HOH630 2.4 42.8 1.0
N C:GLU357 2.8 44.9 1.0
N C:THR358 3.6 38.0 1.0
O C:HOH628 3.6 48.4 1.0
CA C:GLY356 3.6 44.8 1.0
C C:GLY356 3.6 44.8 1.0
O C:HOH603 3.7 40.4 1.0
CA C:GLU357 3.7 44.9 1.0
CB C:GLU357 3.8 44.9 1.0
C C:GLU357 4.1 44.9 1.0
CD2 A:PHE340 4.1 62.3 1.0
O C:HOH613 4.2 52.1 1.0
CG2 C:THR358 4.3 38.0 1.0
O C:GLY355 4.3 46.1 1.0
N A:ASN339 4.3 63.3 1.0
CB C:THR358 4.4 38.0 1.0
CE2 A:PHE340 4.5 62.3 1.0
CA C:THR358 4.6 38.0 1.0
N A:PHE340 4.6 62.3 1.0
CG A:PHE340 4.6 62.3 1.0
O A:ALA337 4.7 59.9 1.0
O C:HOH653 4.7 41.0 1.0
N C:GLY356 4.8 44.8 1.0
O C:GLY356 4.8 44.8 1.0
CB A:ASN339 4.9 63.3 1.0
CB A:PHE340 4.9 62.3 1.0
CA A:HIS338 5.0 56.5 1.0
C C:GLY355 5.0 46.1 1.0

Chlorine binding site 3 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 3 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:42.9
occ:1.00
 CE d:LYS317 3.1 25.1 0.5
ND2 a:ASN182 3.3 20.8 1.0
NZ d:LYS317 3.4 25.1 0.5
CA a:HIS333 3.5 41.7 1.0
CB a:HIS333 3.5 41.7 1.0
O d:HOH541 3.7 30.6 1.0
N a:GLU334 3.8 51.5 1.0
O a:HOH562 3.8 32.3 1.0
CG2 a:VAL186 4.0 20.4 1.0
CB d:LYS317 4.1 25.1 0.5
CB d:LYS317 4.1 25.1 0.5
OD1 a:ASN182 4.1 20.8 1.0
CD1 d:LEU321 4.1 24.8 1.0
CG a:ASN182 4.1 20.8 1.0
C a:HIS333 4.1 41.7 1.0
CG d:LEU321 4.3 24.8 1.0
O d:LYS317 4.3 25.1 1.0
CD2 d:LEU321 4.4 24.8 1.0
CD d:LYS317 4.4 25.1 0.5
CG a:HIS333 4.5 41.7 1.0
O a:HOH546 4.6 38.5 1.0
N a:HIS333 4.7 41.7 1.0
CD d:LYS317 4.7 25.1 0.5
O a:MET332 4.8 37.1 1.0
CD2 a:HIS333 4.8 41.7 1.0
CG d:LYS317 4.8 25.1 0.5
NZ d:LYS317 4.8 25.1 0.5
C d:LYS317 4.9 25.1 1.0
CA d:LYS317 4.9 25.1 0.5
CA d:LYS317 4.9 25.1 0.5

Chlorine binding site 4 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 4 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Cl501

b:54.9
occ:1.00
 O c:HOH630 2.4 42.8 1.0
N c:GLU357 2.8 44.9 1.0
N c:THR358 3.6 38.0 1.0
O c:HOH628 3.6 48.4 1.0
CA c:GLY356 3.6 44.8 1.0
C c:GLY356 3.6 44.8 1.0
O c:HOH603 3.7 40.4 1.0
CA c:GLU357 3.7 44.9 1.0
CB c:GLU357 3.8 44.9 1.0
C c:GLU357 4.1 44.9 1.0
CD2 a:PHE340 4.1 62.3 1.0
O c:HOH613 4.2 52.1 1.0
CG2 c:THR358 4.3 38.0 1.0
O c:GLY355 4.3 46.1 1.0
N a:ASN339 4.3 63.3 1.0
CB c:THR358 4.4 38.0 1.0
CE2 a:PHE340 4.5 62.3 1.0
CA c:THR358 4.6 38.0 1.0
N a:PHE340 4.6 62.3 1.0
CG a:PHE340 4.6 62.3 1.0
O a:ALA337 4.7 59.9 1.0
O c:HOH653 4.7 41.0 1.0
N c:GLY356 4.8 44.8 1.0
O c:GLY356 4.8 44.8 1.0
CB a:PHE340 4.9 62.3 1.0
CB a:ASN339 4.9 63.3 1.0
CA a:HIS338 5.0 56.5 1.0
C c:GLY355 5.0 46.1 1.0

Reference:

C.J.Gisriel, G.Shen, D.A.Flesher, V.Kurashov, J.H.Golbeck, G.W.Brudvig, M.Amin, D.A.Bryant. Structure of A Dimeric Photosystem II Complex From A Cyanobacterium Acclimated to Far-Red Light. J.Biol.Chem. 02815 2022.
ISSN: ESSN 1083-351X
PubMed: 36549647
DOI: 10.1016/J.JBC.2022.102815
Page generated: Tue Apr 4 22:50:30 2023

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