Chlorine in PDB 8eqm: Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light

Other elements in 8eqm:

The structure of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light also contains other interesting chemical elements:

Magnesium (Mg) 70 atoms
Manganese (Mn) 8 atoms
Calcium (Ca) 2 atoms
Iron (Fe) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light (pdb code 8eqm). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light, PDB code: 8eqm:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 1 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:42.9
occ:1.00
 CE D:LYS317 3.1 25.1 0.5
ND2 A:ASN182 3.3 20.8 1.0
NZ D:LYS317 3.4 25.1 0.5
CA A:HIS333 3.5 41.7 1.0
CB A:HIS333 3.5 41.7 1.0
O D:HOH541 3.7 30.6 1.0
N A:GLU334 3.8 51.5 1.0
O A:HOH562 3.8 32.3 1.0
CG2 A:VAL186 4.0 20.4 1.0
CB D:LYS317 4.1 25.1 0.5
CB D:LYS317 4.1 25.1 0.5
OD1 A:ASN182 4.1 20.8 1.0
CD1 D:LEU321 4.1 24.8 1.0
CG A:ASN182 4.1 20.8 1.0
C A:HIS333 4.1 41.7 1.0
CG D:LEU321 4.3 24.8 1.0
O D:LYS317 4.3 25.1 1.0
CD2 D:LEU321 4.4 24.8 1.0
CD D:LYS317 4.4 25.1 0.5
CG A:HIS333 4.5 41.7 1.0
O A:HOH546 4.6 38.5 1.0
N A:HIS333 4.7 41.7 1.0
CD D:LYS317 4.7 25.1 0.5
O A:MET332 4.8 37.1 1.0
CD2 A:HIS333 4.8 41.7 1.0
CG D:LYS317 4.8 25.1 0.5
NZ D:LYS317 4.9 25.1 0.5
C D:LYS317 4.9 25.1 1.0
CA D:LYS317 4.9 25.1 0.5
CA D:LYS317 4.9 25.1 0.5

Chlorine binding site 2 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 2 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl501

b:54.9
occ:1.00
 O C:HOH630 2.4 42.8 1.0
N C:GLU357 2.8 44.9 1.0
N C:THR358 3.6 38.0 1.0
O C:HOH628 3.6 48.4 1.0
CA C:GLY356 3.6 44.8 1.0
C C:GLY356 3.6 44.8 1.0
O C:HOH603 3.7 40.4 1.0
CA C:GLU357 3.7 44.9 1.0
CB C:GLU357 3.8 44.9 1.0
C C:GLU357 4.1 44.9 1.0
CD2 A:PHE340 4.1 62.3 1.0
O C:HOH613 4.2 52.1 1.0
CG2 C:THR358 4.3 38.0 1.0
O C:GLY355 4.3 46.1 1.0
N A:ASN339 4.3 63.3 1.0
CB C:THR358 4.4 38.0 1.0
CE2 A:PHE340 4.5 62.3 1.0
CA C:THR358 4.6 38.0 1.0
N A:PHE340 4.6 62.3 1.0
CG A:PHE340 4.6 62.3 1.0
O A:ALA337 4.7 59.9 1.0
O C:HOH653 4.7 41.0 1.0
N C:GLY356 4.8 44.8 1.0
O C:GLY356 4.8 44.8 1.0
CB A:ASN339 4.9 63.3 1.0
CB A:PHE340 4.9 62.3 1.0
CA A:HIS338 5.0 56.5 1.0
C C:GLY355 5.0 46.1 1.0

Chlorine binding site 3 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 3 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cl403

b:42.9
occ:1.00
 CE d:LYS317 3.1 25.1 0.5
ND2 a:ASN182 3.3 20.8 1.0
NZ d:LYS317 3.4 25.1 0.5
CA a:HIS333 3.5 41.7 1.0
CB a:HIS333 3.5 41.7 1.0
O d:HOH541 3.7 30.6 1.0
N a:GLU334 3.8 51.5 1.0
O a:HOH562 3.8 32.3 1.0
CG2 a:VAL186 4.0 20.4 1.0
CB d:LYS317 4.1 25.1 0.5
CB d:LYS317 4.1 25.1 0.5
OD1 a:ASN182 4.1 20.8 1.0
CD1 d:LEU321 4.1 24.8 1.0
CG a:ASN182 4.1 20.8 1.0
C a:HIS333 4.1 41.7 1.0
CG d:LEU321 4.3 24.8 1.0
O d:LYS317 4.3 25.1 1.0
CD2 d:LEU321 4.4 24.8 1.0
CD d:LYS317 4.4 25.1 0.5
CG a:HIS333 4.5 41.7 1.0
O a:HOH546 4.6 38.5 1.0
N a:HIS333 4.7 41.7 1.0
CD d:LYS317 4.7 25.1 0.5
O a:MET332 4.8 37.1 1.0
CD2 a:HIS333 4.8 41.7 1.0
CG d:LYS317 4.8 25.1 0.5
NZ d:LYS317 4.8 25.1 0.5
C d:LYS317 4.9 25.1 1.0
CA d:LYS317 4.9 25.1 0.5
CA d:LYS317 4.9 25.1 0.5

Chlorine binding site 4 out of 4 in 8eqm

Go back to Chlorine Binding Sites List in 8eqm
Chlorine binding site 4 out of 4 in the Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Dimeric Photosystem II Complex Acclimated to Far-Red Light within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Cl501

b:54.9
occ:1.00
 O c:HOH630 2.4 42.8 1.0
N c:GLU357 2.8 44.9 1.0
N c:THR358 3.6 38.0 1.0
O c:HOH628 3.6 48.4 1.0
CA c:GLY356 3.6 44.8 1.0
C c:GLY356 3.6 44.8 1.0
O c:HOH603 3.7 40.4 1.0
CA c:GLU357 3.7 44.9 1.0
CB c:GLU357 3.8 44.9 1.0
C c:GLU357 4.1 44.9 1.0
CD2 a:PHE340 4.1 62.3 1.0
O c:HOH613 4.2 52.1 1.0
CG2 c:THR358 4.3 38.0 1.0
O c:GLY355 4.3 46.1 1.0
N a:ASN339 4.3 63.3 1.0
CB c:THR358 4.4 38.0 1.0
CE2 a:PHE340 4.5 62.3 1.0
CA c:THR358 4.6 38.0 1.0
N a:PHE340 4.6 62.3 1.0
CG a:PHE340 4.6 62.3 1.0
O a:ALA337 4.7 59.9 1.0
O c:HOH653 4.7 41.0 1.0
N c:GLY356 4.8 44.8 1.0
O c:GLY356 4.8 44.8 1.0
CB a:PHE340 4.9 62.3 1.0
CB a:ASN339 4.9 63.3 1.0
CA a:HIS338 5.0 56.5 1.0
C c:GLY355 5.0 46.1 1.0

Reference:

C.J.Gisriel, G.Shen, D.A.Flesher, V.Kurashov, J.H.Golbeck, G.W.Brudvig, M.Amin, D.A.Bryant. Structure of A Dimeric Photosystem II Complex From A Cyanobacterium Acclimated to Far-Red Light. J.Biol.Chem. 02815 2022.
ISSN: ESSN 1083-351X
PubMed: 36549647
DOI: 10.1016/J.JBC.2022.102815
Page generated: Tue Jul 30 09:02:40 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy