Chlorine in PDB 8fiu: Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold

Protein crystallography data

The structure of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold, PDB code: 8fiu was solved by R.T.Nolte, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.18 / 1.56
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 156.197, 156.197, 56.224, 90, 90, 120
R / Rfree (%) 16.1 / 19.4

Other elements in 8fiu:

The structure of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold also contains other interesting chemical elements:

Fluorine (F) 18 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold (pdb code 8fiu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold, PDB code: 8fiu:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8fiu

Go back to Chlorine Binding Sites List in 8fiu
Chlorine binding site 1 out of 3 in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl304

b:26.6
occ:1.00
CL55 A:Y05304 0.0 26.6 1.0
C54 A:Y05304 1.7 23.0 1.0
C53 A:Y05304 2.6 24.7 1.0
H94 A:Y05304 2.7 29.7 1.0
C56 A:Y05304 2.8 20.1 1.0
H95 A:Y05304 2.9 36.3 1.0
N58 A:Y05304 3.2 30.2 1.0
HG22 A:ILE73 3.2 28.3 1.0
OD1 A:ASN74 3.3 28.8 1.0
C57 A:Y05304 3.4 25.6 1.0
HB A:ILE73 3.4 27.6 1.0
HG21 A:ILE73 3.5 28.3 1.0
O A:HOH445 3.5 29.7 1.0
HD21 A:ASN74 3.6 43.2 1.0
CG2 A:ILE73 3.7 23.5 1.0
HA A:LYS70 3.7 28.7 1.0
HG2 A:LYS70 3.7 38.5 1.0
HB3 A:LYS70 3.7 29.6 1.0
CG A:ASN74 3.8 27.2 1.0
O A:LYS70 3.8 26.1 1.0
ND2 A:ASN74 3.9 36.0 1.0
C52 A:Y05304 4.0 22.7 1.0
O A:HOH472 4.0 28.3 1.0
C66 A:Y05304 4.0 23.0 1.0
CB A:ILE73 4.1 22.9 1.0
HE3 A:LYS70 4.1 52.8 1.0
HD13 A:ILE73 4.2 27.8 1.0
O A:HOH564 4.3 29.2 1.0
CA A:LYS70 4.3 23.9 1.0
CB A:LYS70 4.3 24.6 1.0
HB1 A:ALA105 4.3 28.2 1.0
H A:ASN74 4.3 26.9 1.0
CG A:LYS70 4.4 32.0 1.0
HE2 A:LYS70 4.4 52.8 1.0
C A:LYS70 4.5 26.9 1.0
HD12 A:ILE73 4.5 27.8 1.0
HD22 A:ASN74 4.5 43.2 1.0
C51 A:Y05304 4.5 20.9 1.0
N A:ASN74 4.5 22.4 1.0
HG23 A:ILE73 4.6 28.3 1.0
H93 A:Y05304 4.7 27.3 1.0
N63 A:Y05304 4.7 28.5 1.0
S59 A:Y05304 4.7 31.0 1.0
CE A:LYS70 4.7 43.9 1.0
CD1 A:ILE73 4.7 23.2 1.0
HA A:ASN74 4.8 30.7 1.0
O61 A:Y05304 4.8 32.4 1.0
H86 A:Y05304 4.8 27.1 1.0
CB A:ASN74 4.9 27.2 1.0
C A:ILE73 4.9 21.4 1.0
N64 A:Y05304 4.9 25.5 1.0
CB A:ALA105 5.0 23.5 1.0

Chlorine binding site 2 out of 3 in 8fiu

Go back to Chlorine Binding Sites List in 8fiu
Chlorine binding site 2 out of 3 in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl303

b:27.7
occ:1.00
CL55 B:Y05303 0.0 27.7 1.0
C54 B:Y05303 1.7 22.2 1.0
C53 B:Y05303 2.6 25.9 1.0
H94 B:Y05303 2.7 31.2 1.0
C56 B:Y05303 2.7 23.4 1.0
H95 B:Y05303 2.8 38.2 1.0
N58 B:Y05303 3.1 31.8 1.0
HG22 B:ILE73 3.1 30.9 1.0
OD1 B:ASN74 3.3 32.2 1.0
C57 B:Y05303 3.3 25.6 1.0
HG21 B:ILE73 3.5 30.9 1.0
HB B:ILE73 3.5 26.8 1.0
HD21 B:ASN74 3.5 39.9 1.0
O B:HOH441 3.6 31.2 1.0
CG2 B:ILE73 3.7 25.7 1.0
HA B:LYS70 3.7 28.3 1.0
HG2 B:LYS70 3.7 35.8 1.0
HB3 B:LYS70 3.7 34.6 1.0
CG B:ASN74 3.7 29.3 1.0
O B:LYS70 3.8 27.8 1.0
HE3 B:LYS70 3.8 46.2 1.0
ND2 B:ASN74 3.9 33.2 1.0
C52 B:Y05303 3.9 24.4 1.0
C66 B:Y05303 4.0 25.5 1.0
O B:HOH471 4.1 30.6 1.0
CB B:ILE73 4.1 22.2 1.0
O B:HOH525 4.2 32.4 1.0
CA B:LYS70 4.3 23.6 1.0
CB B:LYS70 4.3 28.8 1.0
HD12 B:ILE73 4.4 28.3 1.0
HB1 B:ALA105 4.4 31.3 1.0
CG B:LYS70 4.4 29.8 1.0
H B:ASN74 4.4 31.4 1.0
C B:LYS70 4.4 24.6 1.0
HE2 B:LYS70 4.4 46.2 1.0
HD13 B:ILE73 4.5 28.3 1.0
HD22 B:ASN74 4.5 39.9 1.0
C51 B:Y05303 4.5 24.7 1.0
HG23 B:ILE73 4.5 30.9 1.0
CE B:LYS70 4.6 38.4 1.0
N B:ASN74 4.6 26.1 1.0
N63 B:Y05303 4.6 27.6 1.0
S59 B:Y05303 4.6 32.6 1.0
H93 B:Y05303 4.6 29.3 1.0
O61 B:Y05303 4.8 35.1 1.0
HA B:ASN74 4.8 33.6 1.0
H86 B:Y05303 4.8 28.8 1.0
CD1 B:ILE73 4.8 23.6 1.0
N64 B:Y05303 4.9 27.8 1.0
CB B:ASN74 4.9 27.7 1.0
C B:ILE73 5.0 23.9 1.0

Chlorine binding site 3 out of 3 in 8fiu

Go back to Chlorine Binding Sites List in 8fiu
Chlorine binding site 3 out of 3 in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl303

b:25.8
occ:1.00
CL55 C:Y05303 0.0 25.8 1.0
C54 C:Y05303 1.7 19.9 1.0
C53 C:Y05303 2.6 21.8 1.0
H94 C:Y05303 2.7 26.3 1.0
C56 C:Y05303 2.7 19.5 1.0
H95 C:Y05303 2.8 34.5 1.0
HG22 C:ILE73 3.1 26.7 1.0
N58 C:Y05303 3.1 28.7 1.0
OD1 C:ASN74 3.3 26.1 1.0
C57 C:Y05303 3.4 24.1 1.0
HD21 C:ASN74 3.5 31.9 1.0
HB C:ILE73 3.5 22.2 1.0
O C:HOH444 3.5 29.5 1.0
HG21 C:ILE73 3.6 26.7 1.0
CG C:ASN74 3.7 23.9 1.0
CG2 C:ILE73 3.7 22.2 1.0
HA C:LYS70 3.7 25.8 1.0
HG2 C:LYS70 3.8 30.6 1.0
ND2 C:ASN74 3.8 26.5 1.0
O C:LYS70 3.8 20.8 1.0
HB3 C:LYS70 3.8 26.7 1.0
HE3 C:LYS70 4.0 47.0 1.0
C52 C:Y05303 4.0 19.5 1.0
C66 C:Y05303 4.0 24.8 1.0
CB C:ILE73 4.1 18.5 1.0
O C:HOH489 4.2 26.2 1.0
HE2 C:LYS70 4.2 47.0 1.0
O C:HOH526 4.3 29.3 1.0
H C:ASN74 4.3 25.1 1.0
CA C:LYS70 4.3 21.4 1.0
CB C:LYS70 4.4 22.2 1.0
HD22 C:ASN74 4.4 31.9 1.0
HD13 C:ILE73 4.5 26.8 1.0
CG C:LYS70 4.5 25.5 1.0
C C:LYS70 4.5 20.4 1.0
HB1 C:ALA105 4.5 27.6 1.0
N C:ASN74 4.5 20.9 1.0
CE C:LYS70 4.5 39.1 1.0
C51 C:Y05303 4.5 20.2 1.0
HD12 C:ILE73 4.6 26.8 1.0
HG23 C:ILE73 4.6 26.7 1.0
S59 C:Y05303 4.6 27.6 1.0
H93 C:Y05303 4.7 23.5 1.0
N63 C:Y05303 4.7 26.9 1.0
HA C:ASN74 4.7 25.9 1.0
O61 C:Y05303 4.8 29.0 1.0
CB C:ASN74 4.8 23.7 1.0
H86 C:Y05303 4.9 22.0 1.0
CD1 C:ILE73 4.9 22.3 1.0
C C:ILE73 4.9 21.1 1.0
N64 C:Y05303 4.9 24.4 1.0
CA C:ASN74 5.0 21.5 1.0

Reference:

E.P.Gillis, K.Parcella, M.Bowsher, J.H.Cook, C.Iwuagwu, B.N.Naidu, M.Patel, K.Peese, H.Huang, L.Valera, C.Wang, K.Kieltyka, D.D.Parker, J.Simmermacher, E.Arnoult, R.T.Nolte, L.Wang, J.A.Bender, D.B.Frennesson, M.Saulnier, A.X.Wang, N.A.Meanwell, M.Belema, U.Hanumegowda, S.Jenkins, M.Krystal, J.F.Kadow, M.Cockett, R.Fridell. Potent Long-Acting Inhibitors Targeting the Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold. J.Med.Chem. V. 66 1941 2023.
ISSN: ISSN 0022-2623
PubMed: 36719971
DOI: 10.1021/ACS.JMEDCHEM.2C01732
Page generated: Tue Apr 4 22:55:12 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy