Chlorine in PDB 8fiu: Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold
Protein crystallography data
The structure of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold, PDB code: 8fiu
was solved by
R.T.Nolte,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.18 /
1.56
|
Space group
|
P 6
|
Cell size a, b, c (Å), α, β, γ (°)
|
156.197,
156.197,
56.224,
90,
90,
120
|
R / Rfree (%)
|
16.1 /
19.4
|
Other elements in 8fiu:
The structure of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold
(pdb code 8fiu). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold, PDB code: 8fiu:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 8fiu
Go back to
Chlorine Binding Sites List in 8fiu
Chlorine binding site 1 out
of 3 in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl304
b:26.6
occ:1.00
|
CL55
|
A:Y05304
|
0.0
|
26.6
|
1.0
|
C54
|
A:Y05304
|
1.7
|
23.0
|
1.0
|
C53
|
A:Y05304
|
2.6
|
24.7
|
1.0
|
H94
|
A:Y05304
|
2.7
|
29.7
|
1.0
|
C56
|
A:Y05304
|
2.8
|
20.1
|
1.0
|
H95
|
A:Y05304
|
2.9
|
36.3
|
1.0
|
N58
|
A:Y05304
|
3.2
|
30.2
|
1.0
|
HG22
|
A:ILE73
|
3.2
|
28.3
|
1.0
|
OD1
|
A:ASN74
|
3.3
|
28.8
|
1.0
|
C57
|
A:Y05304
|
3.4
|
25.6
|
1.0
|
HB
|
A:ILE73
|
3.4
|
27.6
|
1.0
|
HG21
|
A:ILE73
|
3.5
|
28.3
|
1.0
|
O
|
A:HOH445
|
3.5
|
29.7
|
1.0
|
HD21
|
A:ASN74
|
3.6
|
43.2
|
1.0
|
CG2
|
A:ILE73
|
3.7
|
23.5
|
1.0
|
HA
|
A:LYS70
|
3.7
|
28.7
|
1.0
|
HG2
|
A:LYS70
|
3.7
|
38.5
|
1.0
|
HB3
|
A:LYS70
|
3.7
|
29.6
|
1.0
|
CG
|
A:ASN74
|
3.8
|
27.2
|
1.0
|
O
|
A:LYS70
|
3.8
|
26.1
|
1.0
|
ND2
|
A:ASN74
|
3.9
|
36.0
|
1.0
|
C52
|
A:Y05304
|
4.0
|
22.7
|
1.0
|
O
|
A:HOH472
|
4.0
|
28.3
|
1.0
|
C66
|
A:Y05304
|
4.0
|
23.0
|
1.0
|
CB
|
A:ILE73
|
4.1
|
22.9
|
1.0
|
HE3
|
A:LYS70
|
4.1
|
52.8
|
1.0
|
HD13
|
A:ILE73
|
4.2
|
27.8
|
1.0
|
O
|
A:HOH564
|
4.3
|
29.2
|
1.0
|
CA
|
A:LYS70
|
4.3
|
23.9
|
1.0
|
CB
|
A:LYS70
|
4.3
|
24.6
|
1.0
|
HB1
|
A:ALA105
|
4.3
|
28.2
|
1.0
|
H
|
A:ASN74
|
4.3
|
26.9
|
1.0
|
CG
|
A:LYS70
|
4.4
|
32.0
|
1.0
|
HE2
|
A:LYS70
|
4.4
|
52.8
|
1.0
|
C
|
A:LYS70
|
4.5
|
26.9
|
1.0
|
HD12
|
A:ILE73
|
4.5
|
27.8
|
1.0
|
HD22
|
A:ASN74
|
4.5
|
43.2
|
1.0
|
C51
|
A:Y05304
|
4.5
|
20.9
|
1.0
|
N
|
A:ASN74
|
4.5
|
22.4
|
1.0
|
HG23
|
A:ILE73
|
4.6
|
28.3
|
1.0
|
H93
|
A:Y05304
|
4.7
|
27.3
|
1.0
|
N63
|
A:Y05304
|
4.7
|
28.5
|
1.0
|
S59
|
A:Y05304
|
4.7
|
31.0
|
1.0
|
CE
|
A:LYS70
|
4.7
|
43.9
|
1.0
|
CD1
|
A:ILE73
|
4.7
|
23.2
|
1.0
|
HA
|
A:ASN74
|
4.8
|
30.7
|
1.0
|
O61
|
A:Y05304
|
4.8
|
32.4
|
1.0
|
H86
|
A:Y05304
|
4.8
|
27.1
|
1.0
|
CB
|
A:ASN74
|
4.9
|
27.2
|
1.0
|
C
|
A:ILE73
|
4.9
|
21.4
|
1.0
|
N64
|
A:Y05304
|
4.9
|
25.5
|
1.0
|
CB
|
A:ALA105
|
5.0
|
23.5
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 8fiu
Go back to
Chlorine Binding Sites List in 8fiu
Chlorine binding site 2 out
of 3 in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:27.7
occ:1.00
|
CL55
|
B:Y05303
|
0.0
|
27.7
|
1.0
|
C54
|
B:Y05303
|
1.7
|
22.2
|
1.0
|
C53
|
B:Y05303
|
2.6
|
25.9
|
1.0
|
H94
|
B:Y05303
|
2.7
|
31.2
|
1.0
|
C56
|
B:Y05303
|
2.7
|
23.4
|
1.0
|
H95
|
B:Y05303
|
2.8
|
38.2
|
1.0
|
N58
|
B:Y05303
|
3.1
|
31.8
|
1.0
|
HG22
|
B:ILE73
|
3.1
|
30.9
|
1.0
|
OD1
|
B:ASN74
|
3.3
|
32.2
|
1.0
|
C57
|
B:Y05303
|
3.3
|
25.6
|
1.0
|
HG21
|
B:ILE73
|
3.5
|
30.9
|
1.0
|
HB
|
B:ILE73
|
3.5
|
26.8
|
1.0
|
HD21
|
B:ASN74
|
3.5
|
39.9
|
1.0
|
O
|
B:HOH441
|
3.6
|
31.2
|
1.0
|
CG2
|
B:ILE73
|
3.7
|
25.7
|
1.0
|
HA
|
B:LYS70
|
3.7
|
28.3
|
1.0
|
HG2
|
B:LYS70
|
3.7
|
35.8
|
1.0
|
HB3
|
B:LYS70
|
3.7
|
34.6
|
1.0
|
CG
|
B:ASN74
|
3.7
|
29.3
|
1.0
|
O
|
B:LYS70
|
3.8
|
27.8
|
1.0
|
HE3
|
B:LYS70
|
3.8
|
46.2
|
1.0
|
ND2
|
B:ASN74
|
3.9
|
33.2
|
1.0
|
C52
|
B:Y05303
|
3.9
|
24.4
|
1.0
|
C66
|
B:Y05303
|
4.0
|
25.5
|
1.0
|
O
|
B:HOH471
|
4.1
|
30.6
|
1.0
|
CB
|
B:ILE73
|
4.1
|
22.2
|
1.0
|
O
|
B:HOH525
|
4.2
|
32.4
|
1.0
|
CA
|
B:LYS70
|
4.3
|
23.6
|
1.0
|
CB
|
B:LYS70
|
4.3
|
28.8
|
1.0
|
HD12
|
B:ILE73
|
4.4
|
28.3
|
1.0
|
HB1
|
B:ALA105
|
4.4
|
31.3
|
1.0
|
CG
|
B:LYS70
|
4.4
|
29.8
|
1.0
|
H
|
B:ASN74
|
4.4
|
31.4
|
1.0
|
C
|
B:LYS70
|
4.4
|
24.6
|
1.0
|
HE2
|
B:LYS70
|
4.4
|
46.2
|
1.0
|
HD13
|
B:ILE73
|
4.5
|
28.3
|
1.0
|
HD22
|
B:ASN74
|
4.5
|
39.9
|
1.0
|
C51
|
B:Y05303
|
4.5
|
24.7
|
1.0
|
HG23
|
B:ILE73
|
4.5
|
30.9
|
1.0
|
CE
|
B:LYS70
|
4.6
|
38.4
|
1.0
|
N
|
B:ASN74
|
4.6
|
26.1
|
1.0
|
N63
|
B:Y05303
|
4.6
|
27.6
|
1.0
|
S59
|
B:Y05303
|
4.6
|
32.6
|
1.0
|
H93
|
B:Y05303
|
4.6
|
29.3
|
1.0
|
O61
|
B:Y05303
|
4.8
|
35.1
|
1.0
|
HA
|
B:ASN74
|
4.8
|
33.6
|
1.0
|
H86
|
B:Y05303
|
4.8
|
28.8
|
1.0
|
CD1
|
B:ILE73
|
4.8
|
23.6
|
1.0
|
N64
|
B:Y05303
|
4.9
|
27.8
|
1.0
|
CB
|
B:ASN74
|
4.9
|
27.7
|
1.0
|
C
|
B:ILE73
|
5.0
|
23.9
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 8fiu
Go back to
Chlorine Binding Sites List in 8fiu
Chlorine binding site 3 out
of 3 in the Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Potent Long-Acting Inhibitors Targeting Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl303
b:25.8
occ:1.00
|
CL55
|
C:Y05303
|
0.0
|
25.8
|
1.0
|
C54
|
C:Y05303
|
1.7
|
19.9
|
1.0
|
C53
|
C:Y05303
|
2.6
|
21.8
|
1.0
|
H94
|
C:Y05303
|
2.7
|
26.3
|
1.0
|
C56
|
C:Y05303
|
2.7
|
19.5
|
1.0
|
H95
|
C:Y05303
|
2.8
|
34.5
|
1.0
|
HG22
|
C:ILE73
|
3.1
|
26.7
|
1.0
|
N58
|
C:Y05303
|
3.1
|
28.7
|
1.0
|
OD1
|
C:ASN74
|
3.3
|
26.1
|
1.0
|
C57
|
C:Y05303
|
3.4
|
24.1
|
1.0
|
HD21
|
C:ASN74
|
3.5
|
31.9
|
1.0
|
HB
|
C:ILE73
|
3.5
|
22.2
|
1.0
|
O
|
C:HOH444
|
3.5
|
29.5
|
1.0
|
HG21
|
C:ILE73
|
3.6
|
26.7
|
1.0
|
CG
|
C:ASN74
|
3.7
|
23.9
|
1.0
|
CG2
|
C:ILE73
|
3.7
|
22.2
|
1.0
|
HA
|
C:LYS70
|
3.7
|
25.8
|
1.0
|
HG2
|
C:LYS70
|
3.8
|
30.6
|
1.0
|
ND2
|
C:ASN74
|
3.8
|
26.5
|
1.0
|
O
|
C:LYS70
|
3.8
|
20.8
|
1.0
|
HB3
|
C:LYS70
|
3.8
|
26.7
|
1.0
|
HE3
|
C:LYS70
|
4.0
|
47.0
|
1.0
|
C52
|
C:Y05303
|
4.0
|
19.5
|
1.0
|
C66
|
C:Y05303
|
4.0
|
24.8
|
1.0
|
CB
|
C:ILE73
|
4.1
|
18.5
|
1.0
|
O
|
C:HOH489
|
4.2
|
26.2
|
1.0
|
HE2
|
C:LYS70
|
4.2
|
47.0
|
1.0
|
O
|
C:HOH526
|
4.3
|
29.3
|
1.0
|
H
|
C:ASN74
|
4.3
|
25.1
|
1.0
|
CA
|
C:LYS70
|
4.3
|
21.4
|
1.0
|
CB
|
C:LYS70
|
4.4
|
22.2
|
1.0
|
HD22
|
C:ASN74
|
4.4
|
31.9
|
1.0
|
HD13
|
C:ILE73
|
4.5
|
26.8
|
1.0
|
CG
|
C:LYS70
|
4.5
|
25.5
|
1.0
|
C
|
C:LYS70
|
4.5
|
20.4
|
1.0
|
HB1
|
C:ALA105
|
4.5
|
27.6
|
1.0
|
N
|
C:ASN74
|
4.5
|
20.9
|
1.0
|
CE
|
C:LYS70
|
4.5
|
39.1
|
1.0
|
C51
|
C:Y05303
|
4.5
|
20.2
|
1.0
|
HD12
|
C:ILE73
|
4.6
|
26.8
|
1.0
|
HG23
|
C:ILE73
|
4.6
|
26.7
|
1.0
|
S59
|
C:Y05303
|
4.6
|
27.6
|
1.0
|
H93
|
C:Y05303
|
4.7
|
23.5
|
1.0
|
N63
|
C:Y05303
|
4.7
|
26.9
|
1.0
|
HA
|
C:ASN74
|
4.7
|
25.9
|
1.0
|
O61
|
C:Y05303
|
4.8
|
29.0
|
1.0
|
CB
|
C:ASN74
|
4.8
|
23.7
|
1.0
|
H86
|
C:Y05303
|
4.9
|
22.0
|
1.0
|
CD1
|
C:ILE73
|
4.9
|
22.3
|
1.0
|
C
|
C:ILE73
|
4.9
|
21.1
|
1.0
|
N64
|
C:Y05303
|
4.9
|
24.4
|
1.0
|
CA
|
C:ASN74
|
5.0
|
21.5
|
1.0
|
|
Reference:
E.P.Gillis,
K.Parcella,
M.Bowsher,
J.H.Cook,
C.Iwuagwu,
B.N.Naidu,
M.Patel,
K.Peese,
H.Huang,
L.Valera,
C.Wang,
K.Kieltyka,
D.D.Parker,
J.Simmermacher,
E.Arnoult,
R.T.Nolte,
L.Wang,
J.A.Bender,
D.B.Frennesson,
M.Saulnier,
A.X.Wang,
N.A.Meanwell,
M.Belema,
U.Hanumegowda,
S.Jenkins,
M.Krystal,
J.F.Kadow,
M.Cockett,
R.Fridell.
Potent Long-Acting Inhibitors Targeting the Hiv-1 Capsid Based on A Versatile Quinazolin-4-One Scaffold. J.Med.Chem. V. 66 1941 2023.
ISSN: ISSN 0022-2623
PubMed: 36719971
DOI: 10.1021/ACS.JMEDCHEM.2C01732
Page generated: Tue Jul 30 09:34:49 2024
|