Chlorine in PDB 8ftl: Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1

Enzymatic activity of Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1

All present enzymatic activity of Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1:
3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1, PDB code: 8ftl was solved by E.M.Lewandowski, S.G.Butler, Y.Hu, H.Tan, J.Wang, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.45 / 2.08
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.365, 53.725, 113.799, 90, 101.38, 90
R / Rfree (%) 20.3 / 25.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1 (pdb code 8ftl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1, PDB code: 8ftl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8ftl

Go back to Chlorine Binding Sites List in 8ftl
Chlorine binding site 1 out of 2 in the Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:88.8
occ:1.00
CL35 A:5ZF401 0.0 88.8 1.0
C34 A:5ZF401 1.8 48.8 1.0
C02 A:5ZF401 2.8 49.6 1.0
SG A:CYS145 2.9 41.3 1.0
CB A:CYS145 2.9 35.3 1.0
O01 A:5ZF401 3.1 50.2 1.0
N A:CYS145 3.2 32.1 1.0
N A:GLY143 3.3 38.0 1.0
CA A:GLY143 3.3 41.5 1.0
C A:GLY143 3.5 35.9 1.0
CA A:CYS145 3.6 30.0 1.0
N A:SER144 3.8 35.0 1.0
O A:GLY143 3.9 35.9 1.0
N03 A:5ZF401 4.1 46.1 1.0
C A:SER144 4.3 32.9 1.0
CB A:LEU27 4.4 33.5 1.0
O A:CYS145 4.5 31.1 1.0
C A:CYS145 4.5 28.6 1.0
C A:ASN142 4.6 38.4 1.0
C04 A:5ZF401 4.6 51.6 1.0
CE1 A:HIS41 4.6 39.4 1.0
CA A:SER144 4.7 32.2 1.0
O A:THR26 4.9 38.7 1.0

Chlorine binding site 2 out of 2 in 8ftl

Go back to Chlorine Binding Sites List in 8ftl
Chlorine binding site 2 out of 2 in the Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:83.5
occ:1.00
CL35 B:5ZF401 0.0 83.5 1.0
C34 B:5ZF401 1.8 41.6 1.0
C02 B:5ZF401 2.8 49.0 1.0
SG B:CYS145 2.8 39.2 1.0
CB B:CYS145 2.9 39.8 1.0
O01 B:5ZF401 3.1 52.2 1.0
N B:CYS145 3.1 36.4 1.0
CA B:GLY143 3.4 43.3 1.0
C B:GLY143 3.5 39.1 1.0
N B:GLY143 3.5 40.0 1.0
CA B:CYS145 3.6 35.0 1.0
N B:SER144 3.8 37.2 1.0
O B:GLY143 3.9 38.9 1.0
N03 B:5ZF401 4.1 42.3 1.0
CB B:LEU27 4.2 40.2 1.0
C B:SER144 4.3 36.9 1.0
O B:CYS145 4.4 38.0 1.0
C B:CYS145 4.5 34.5 1.0
CA B:SER144 4.6 36.9 1.0
CE1 B:HIS41 4.6 40.5 1.0
C04 B:5ZF401 4.6 49.1 1.0
O B:THR26 4.7 52.0 1.0
C B:ASN142 4.8 42.2 1.0
CA B:LEU27 4.9 44.4 1.0

Reference:

E.M.Lewandowski, S.G.Butler, Y.Hu, H.Tan, J.Wang, Y.Chen. Crystal Structure of the Sars-Cov-2 (Covid-19) Main Protease (Mpro) in Complex with Inhibitor JUN89-3-C1 To Be Published.
Page generated: Tue Jul 30 09:47:47 2024

Last articles

Zn in 2YRC
Zn in 2YQP
Zn in 2YR2
Zn in 2YQL
Zn in 2YPT
Zn in 2YPA
Zn in 2YPU
Zn in 2YNW
Zn in 2YNT
Zn in 2YNV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy