Chlorine in PDB 8fux: Kpsc D160C Ternary Complex
Protein crystallography data
The structure of Kpsc D160C Ternary Complex, PDB code: 8fux
was solved by
M.S.Kimber,
L.Doyle,
C.Whitfield,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.43 /
1.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.54,
80.3,
65.98,
90,
103.04,
90
|
R / Rfree (%)
|
12.4 /
15.7
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Kpsc D160C Ternary Complex
(pdb code 8fux). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Kpsc D160C Ternary Complex, PDB code: 8fux:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8fux
Go back to
Chlorine Binding Sites List in 8fux
Chlorine binding site 1 out
of 2 in the Kpsc D160C Ternary Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Kpsc D160C Ternary Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl406
b:18.1
occ:1.00
|
HD1
|
A:HIS171
|
2.6
|
21.9
|
1.0
|
HD2
|
A:PRO170
|
2.7
|
18.7
|
1.0
|
H
|
A:HIS171
|
2.7
|
15.5
|
1.0
|
HA3
|
A:GLY169
|
2.8
|
14.5
|
1.0
|
O
|
A:HOH648
|
3.0
|
15.5
|
1.0
|
ND1
|
A:HIS171
|
3.3
|
18.3
|
1.0
|
HB2
|
A:HIS171
|
3.4
|
14.8
|
1.0
|
CD
|
A:PRO170
|
3.5
|
15.6
|
1.0
|
N
|
A:PRO170
|
3.5
|
14.3
|
1.0
|
N
|
A:HIS171
|
3.6
|
12.9
|
1.0
|
CA
|
A:GLY169
|
3.6
|
12.1
|
1.0
|
C
|
A:GLY169
|
3.7
|
13.2
|
1.0
|
HB2
|
A:PRO170
|
4.0
|
18.5
|
1.0
|
CB
|
A:HIS171
|
4.0
|
12.4
|
1.0
|
CG
|
A:HIS171
|
4.0
|
13.5
|
1.0
|
HD3
|
A:PRO170
|
4.1
|
18.7
|
1.0
|
N
|
A:GLY169
|
4.2
|
11.8
|
1.0
|
HA2
|
A:GLY169
|
4.3
|
14.5
|
1.0
|
H
|
A:GLY169
|
4.4
|
14.1
|
1.0
|
CA
|
A:PRO170
|
4.4
|
14.0
|
1.0
|
CE1
|
A:HIS171
|
4.4
|
15.1
|
1.0
|
CG
|
A:PRO170
|
4.4
|
17.1
|
1.0
|
CA
|
A:HIS171
|
4.4
|
11.9
|
1.0
|
C
|
A:PRO170
|
4.4
|
13.4
|
1.0
|
O
|
A:GLY169
|
4.4
|
12.3
|
1.0
|
OE1
|
A:GLU172
|
4.5
|
13.1
|
1.0
|
HG2
|
A:PRO170
|
4.5
|
20.4
|
1.0
|
CB
|
A:PRO170
|
4.5
|
15.4
|
1.0
|
HE1
|
A:HIS171
|
4.6
|
18.1
|
1.0
|
H
|
A:GLU172
|
4.7
|
13.4
|
1.0
|
HB3
|
A:HIS171
|
4.9
|
14.8
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8fux
Go back to
Chlorine Binding Sites List in 8fux
Chlorine binding site 2 out
of 2 in the Kpsc D160C Ternary Complex
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Kpsc D160C Ternary Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl405
b:23.6
occ:0.87
|
H
|
B:GLN186
|
2.3
|
20.2
|
0.5
|
H
|
B:GLN186
|
2.3
|
20.2
|
0.5
|
HA
|
B:ASN184
|
2.7
|
13.4
|
1.0
|
HB2
|
B:GLN186
|
2.9
|
23.4
|
0.5
|
O
|
B:HOH818
|
3.0
|
30.0
|
1.0
|
HD2
|
B:PRO185
|
3.1
|
16.9
|
1.0
|
N
|
B:GLN186
|
3.1
|
16.8
|
1.0
|
HB2
|
B:GLN186
|
3.2
|
26.6
|
0.5
|
C
|
B:ASN184
|
3.2
|
11.5
|
1.0
|
H
|
B:ALA187
|
3.3
|
19.1
|
1.0
|
CA
|
B:ASN184
|
3.3
|
11.2
|
1.0
|
HB2
|
B:ALA187
|
3.4
|
20.4
|
1.0
|
HB3
|
B:ASN184
|
3.4
|
15.4
|
1.0
|
N
|
B:PRO185
|
3.4
|
13.4
|
1.0
|
O
|
B:HOH548
|
3.6
|
28.7
|
1.0
|
N
|
B:ALA187
|
3.6
|
15.9
|
1.0
|
HG2
|
B:GLN186
|
3.6
|
30.5
|
0.5
|
O
|
B:ASN184
|
3.7
|
12.7
|
1.0
|
CB
|
B:GLN186
|
3.7
|
19.5
|
0.5
|
CD
|
B:PRO185
|
3.7
|
14.1
|
1.0
|
CA
|
B:GLN186
|
3.7
|
17.8
|
0.5
|
CA
|
B:GLN186
|
3.8
|
18.8
|
0.5
|
CB
|
B:GLN186
|
3.8
|
22.2
|
0.5
|
CB
|
B:ASN184
|
3.9
|
12.8
|
1.0
|
C
|
B:GLN186
|
3.9
|
19.0
|
1.0
|
OE1
|
B:GLN186
|
4.1
|
19.2
|
0.5
|
CB
|
B:ALA187
|
4.1
|
17.0
|
1.0
|
C
|
B:PRO185
|
4.2
|
16.2
|
1.0
|
HB3
|
B:GLN186
|
4.2
|
23.4
|
0.5
|
CG
|
B:GLN186
|
4.2
|
25.4
|
0.5
|
HG2
|
B:PRO185
|
4.3
|
20.8
|
1.0
|
HB3
|
B:ALA187
|
4.3
|
20.4
|
1.0
|
CA
|
B:PRO185
|
4.4
|
15.8
|
1.0
|
CA
|
B:ALA187
|
4.4
|
16.1
|
1.0
|
HD3
|
B:PRO185
|
4.4
|
16.9
|
1.0
|
CG
|
B:PRO185
|
4.5
|
17.3
|
1.0
|
HB2
|
B:ASN184
|
4.6
|
15.4
|
1.0
|
HA
|
B:ALA187
|
4.6
|
19.3
|
1.0
|
N
|
B:ASN184
|
4.6
|
11.2
|
1.0
|
HB3
|
B:GLN186
|
4.7
|
26.6
|
0.5
|
CD
|
B:GLN186
|
4.7
|
21.1
|
0.5
|
HA
|
B:GLN186
|
4.7
|
21.4
|
0.5
|
HG3
|
B:GLN186
|
4.7
|
30.5
|
0.5
|
HA
|
B:GLN186
|
4.7
|
22.5
|
0.5
|
OD1
|
B:ASN184
|
4.7
|
15.5
|
1.0
|
CG
|
B:GLN186
|
4.8
|
21.0
|
0.5
|
O
|
B:GLU183
|
4.8
|
13.6
|
1.0
|
HB2
|
B:ASN149
|
4.8
|
30.7
|
1.0
|
CG
|
B:ASN184
|
4.8
|
12.5
|
1.0
|
O
|
B:GLN186
|
4.9
|
21.5
|
1.0
|
HB1
|
B:ALA187
|
5.0
|
20.4
|
1.0
|
|
Reference:
L.Doyle,
O.G.Ovchinnikova,
B.Huang,
T.J.B.Forrester,
T.L.Lowary,
M.S.Kimber,
C.Whitfield.
Mechanism and Linkage Specificities of the Dual Retaining Beta-Kdo Glycosyltransferase Modules of Kpsc From Bacterial Capsule Biosynthesis To Be Published.
Page generated: Tue Jul 30 09:48:38 2024
|