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Chlorine in PDB 5rmj: Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550:
3.6.4.12; 3.6.4.13;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550, PDB code: 5rmj was solved by J.A.Newman, Y.Yosaatmadja, A.Douangamath, A.Aimon, A.J.Powell, A.Dias, D.Fearon, L.Dunnett, J.Brandao-Neto, T.Krojer, R.Skyner, T.Gorrie-Stone, W.Thompson, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 81.23 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 58.840, 70.136, 85.256, 103.14, 95.74, 112.26
R / Rfree (%) 23.3 / 29.7

Other elements in 5rmj:

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550 also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550 (pdb code 5rmj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550, PDB code: 5rmj:

Chlorine binding site 1 out of 1 in 5rmj

Go back to Chlorine Binding Sites List in 5rmj
Chlorine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Sars-Cov-2 Helicase in Complex with Z68299550 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl701

b:46.5
occ:0.57
 CL15 B:JOV701 0.0 46.5 0.6
C13 B:JOV701 1.7 42.5 0.6
C12 B:JOV701 2.7 42.7 0.6
C14 B:JOV701 2.7 43.4 0.6
N B:PHE499 3.4 41.9 1.0
CA B:PHE499 3.5 38.1 1.0
O B:VAL495 3.5 39.0 1.0
CG B:PRO593 3.6 70.7 1.0
CB B:PHE499 3.6 34.8 1.0
C B:GLU498 3.9 43.9 1.0
C11 B:JOV701 4.0 41.7 0.6
C09 B:JOV701 4.0 40.6 0.6
CB B:GLU498 4.1 40.0 1.0
CG B:GLU498 4.1 46.4 1.0
NH2 B:ARG502 4.1 47.5 0.6
CD B:PRO593 4.1 66.8 1.0
O B:GLU498 4.3 42.8 1.0
CD2 B:PHE499 4.4 34.6 1.0
CZ B:ARG502 4.4 44.6 0.6
CE B:MET474 4.5 34.1 0.3
C10 B:JOV701 4.5 39.6 0.6
CG1 B:VAL495 4.5 40.9 1.0
CG B:PHE499 4.5 34.4 1.0
C B:VAL495 4.6 41.6 1.0
CA B:GLU498 4.6 38.6 1.0
SD B:MET474 4.6 41.1 0.2
NH1 B:ARG502 4.8 43.5 0.6
NE B:ARG502 4.9 41.5 0.6
C B:PHE499 5.0 40.3 1.0
CB B:PRO593 5.0 73.0 1.0

Reference:

J.A.Newman, Y.Yosaatmadja, A.Douangamath, A.Aimon, A.J.Powell, A.Dias, D.Fearon, L.Dunnett, J.Brandao-Neto, T.Krojer, R.Skyner, T.Gorrie-Stone, W.Thompson, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi. Pandda Analysis Group Deposition To Be Published.
Page generated: Sat Jul 12 08:14:13 2025

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