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Chlorine in PDB 8fyv: Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine

Protein crystallography data

The structure of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine, PDB code: 8fyv was solved by A.Baylink, Z.Gentry-Lear, S.Glenn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 125.807, 75.231, 129.588, 90, 116.47, 90
R / Rfree (%) 24.1 / 25.8

Other elements in 8fyv:

The structure of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine (pdb code 8fyv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine, PDB code: 8fyv:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 8fyv

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Chlorine binding site 1 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:45.3
occ:1.00
 HB3 A:SER158 2.8 33.7 1.0
H A:SER158 2.8 32.9 1.0
HB3 A:GLN157 2.9 34.2 1.0
O B:HOH348 3.1 35.4 0.5
HA A:PRO155 3.2 34.1 1.0
HB2 A:PRO155 3.2 41.1 1.0
HB3 A:PRO155 3.4 41.1 1.0
N A:SER158 3.5 26.9 1.0
CB A:PRO155 3.6 33.8 1.0
CA A:PRO155 3.7 27.9 1.0
CB A:SER158 3.7 27.6 1.0
CB A:GLN157 3.9 28.0 1.0
H A:GLN157 3.9 33.7 1.0
O B:HOH341 4.0 38.7 0.5
C A:PRO155 4.0 28.1 1.0
O A:PRO155 4.0 29.4 1.0
CA A:SER158 4.1 24.4 1.0
HB2 A:SER158 4.3 33.7 1.0
C A:GLN157 4.3 26.6 1.0
N A:GLN157 4.3 27.6 1.0
HB2 A:GLN157 4.3 34.2 1.0
O A:HOH317 4.3 25.6 1.0
CA A:GLN157 4.4 26.2 1.0
HG A:SER158 4.4 41.0 1.0
HA A:SER158 4.4 29.8 1.0
OG A:SER158 4.5 33.7 1.0
O A:HOH340 4.6 35.3 1.0
HG2 A:GLN157 4.8 31.1 1.0
CG A:GLN157 4.8 25.4 1.0
HG3 A:GLN157 4.8 31.1 1.0
N A:THR156 4.8 27.5 1.0

Chlorine binding site 2 out of 9 in 8fyv

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Chlorine binding site 2 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:43.7
occ:1.00
 H A:GLU150 2.4 41.4 1.0
HB2 A:ASN149 2.8 43.9 1.0
HA A:LYS147 2.9 46.3 1.0
H A:ASN149 2.9 39.3 1.0
HB3 A:LYS147 3.2 46.9 1.0
HB2 A:GLU150 3.3 47.2 1.0
N A:GLU150 3.3 34.0 1.0
HG2 A:LYS147 3.4 50.5 1.0
CA A:LYS147 3.4 38.1 1.0
N A:ASN149 3.5 32.3 1.0
C A:LYS147 3.5 33.7 1.0
CB A:LYS147 3.6 38.6 1.0
CB A:ASN149 3.7 36.1 1.0
H A:ILE148 3.8 39.0 1.0
N A:ILE148 3.8 32.0 1.0
HB3 A:GLU150 3.8 47.2 1.0
CG A:LYS147 3.8 41.6 1.0
CB A:GLU150 3.9 38.9 1.0
HG3 A:LYS147 3.9 50.5 1.0
CA A:ASN149 4.0 37.0 1.0
O A:LYS147 4.0 36.2 1.0
C A:ASN149 4.1 36.6 1.0
CA A:GLU150 4.2 34.8 1.0
OD1 A:ASN149 4.3 40.0 1.0
HB3 A:ASN149 4.3 43.9 1.0
HG22 A:ILE148 4.3 43.1 1.0
C A:ILE148 4.5 33.8 1.0
CG A:ASN149 4.5 35.3 1.0
H A:PHE151 4.6 37.0 1.0
HB2 A:LYS147 4.6 46.9 1.0
OE1 A:GLU150 4.7 46.8 1.0
CA A:ILE148 4.7 36.4 1.0
HA A:GLU150 4.8 42.3 1.0
N A:LYS147 4.8 36.0 1.0
O A:GLY146 4.9 37.3 1.0
HA A:ASN149 4.9 45.0 1.0

Chlorine binding site 3 out of 9 in 8fyv

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Chlorine binding site 3 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:48.4
occ:1.00
 H B:GLU150 2.5 53.6 1.0
H B:ASN149 2.6 56.2 1.0
HB2 B:ASN149 2.6 65.1 1.0
HA B:LYS147 2.8 54.2 1.0
HG3 B:GLU150 2.8 59.9 1.0
HB3 B:LYS147 2.9 55.6 1.0
HD21 B:ASN149 3.1 84.9 1.0
N B:ASN149 3.3 46.4 1.0
CA B:LYS147 3.3 44.7 1.0
N B:GLU150 3.4 44.1 1.0
C B:LYS147 3.4 43.6 1.0
CB B:ASN149 3.5 53.8 1.0
CB B:LYS147 3.5 45.9 1.0
H B:ILE148 3.6 51.0 1.0
N B:ILE148 3.6 42.0 1.0
HG2 B:LYS147 3.6 55.5 1.0
CG B:GLU150 3.7 49.5 1.0
CA B:ASN149 3.8 49.0 1.0
ND2 B:ASN149 3.8 70.3 1.0
O B:LYS147 3.9 40.8 1.0
HB2 B:GLU150 3.9 54.3 1.0
C B:ASN149 4.1 40.2 1.0
CG B:LYS147 4.1 45.8 1.0
CG B:ASN149 4.2 56.4 1.0
HB3 B:ASN149 4.2 65.1 1.0
CB B:GLU150 4.2 44.8 1.0
HG2 B:GLU150 4.2 59.9 1.0
C B:ILE148 4.2 49.7 1.0
HB2 B:LYS147 4.4 55.6 1.0
CA B:GLU150 4.4 43.4 1.0
OE2 B:GLU150 4.4 56.1 1.0
HG22 B:ILE148 4.4 65.2 1.0
HD22 B:ASN149 4.5 84.9 1.0
CA B:ILE148 4.5 48.8 1.0
CD B:GLU150 4.6 61.8 1.0
H B:PHE151 4.6 47.4 1.0
HA B:ASN149 4.7 59.3 1.0
N B:LYS147 4.7 38.5 1.0
HG3 B:LYS147 4.7 55.5 1.0
O B:GLY146 4.8 45.0 1.0
HA B:GLU150 5.0 52.7 1.0

Chlorine binding site 4 out of 9 in 8fyv

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Chlorine binding site 4 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl206

b:47.5
occ:1.00
 H B:SER158 2.6 36.0 1.0
HB3 B:SER158 2.7 32.0 1.0
HB3 B:GLN157 2.8 37.2 1.0
HA B:PRO155 3.0 41.6 1.0
HB2 B:PRO155 3.1 41.0 1.0
HB3 B:PRO155 3.3 41.0 1.0
N B:SER158 3.3 29.6 1.0
CB B:PRO155 3.4 33.7 1.0
CA B:PRO155 3.5 34.2 1.0
CB B:SER158 3.6 26.2 1.0
C B:PRO155 3.7 30.4 1.0
CB B:GLN157 3.7 30.5 1.0
H B:GLN157 3.7 39.1 1.0
O B:PRO155 3.7 32.7 1.0
CA B:SER158 4.0 27.2 1.0
N B:GLN157 4.0 32.1 1.0
HB2 B:GLN157 4.0 37.2 1.0
C B:GLN157 4.1 26.6 1.0
O A:HOH337 4.1 48.4 1.0
CA B:GLN157 4.2 28.0 1.0
O B:HOH331 4.2 28.0 1.0
OG B:SER158 4.3 35.0 1.0
HB2 B:SER158 4.3 32.0 1.0
HA B:SER158 4.3 33.3 1.0
HG B:SER158 4.5 42.5 1.0
N B:THR156 4.5 33.0 1.0
CG B:GLN157 4.8 32.4 1.0
HG3 B:GLN157 4.8 39.5 1.0
H B:THR156 4.8 40.1 1.0
HG2 B:GLN157 4.8 39.5 1.0
N B:PRO155 4.9 34.8 1.0
C B:THR156 4.9 28.6 1.0
CG B:PRO155 4.9 36.8 1.0

Chlorine binding site 5 out of 9 in 8fyv

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Chlorine binding site 5 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl202

b:39.9
occ:1.00
 H C:GLU150 2.5 41.0 1.0
HB2 C:ASN149 2.7 46.0 1.0
H C:ASN149 2.7 45.5 1.0
HA C:LYS147 2.8 50.2 1.0
HB3 C:LYS147 3.0 53.8 1.0
CA C:LYS147 3.3 41.4 1.0
N C:GLU150 3.3 33.7 1.0
C C:LYS147 3.4 39.6 1.0
N C:ASN149 3.4 37.4 1.0
HB2 C:GLU150 3.5 49.4 1.0
CB C:LYS147 3.5 44.4 1.0
CB C:ASN149 3.6 37.9 1.0
N C:ILE148 3.7 34.2 1.0
HG2 C:LYS147 3.7 54.2 1.0
H C:ILE148 3.7 41.7 1.0
O C:LYS147 3.8 37.9 1.0
CA C:ASN149 3.8 34.0 1.0
HB3 C:GLU150 4.0 49.4 1.0
CB C:GLU150 4.1 40.7 1.0
C C:ASN149 4.1 33.7 1.0
CG C:LYS147 4.1 44.7 1.0
HB3 C:ASN149 4.1 46.0 1.0
CA C:GLU150 4.3 35.7 1.0
C C:ILE148 4.3 36.0 1.0
OD1 C:ASN149 4.4 37.4 1.0
HG22 C:ILE148 4.4 45.3 1.0
HB2 C:LYS147 4.4 53.8 1.0
HD2 C:LYS147 4.4 72.0 1.0
CG C:ASN149 4.5 36.7 1.0
H C:PHE151 4.6 43.1 1.0
CA C:ILE148 4.6 37.0 1.0
N C:LYS147 4.7 42.5 1.0
CD C:LYS147 4.7 59.5 1.0
HA C:ASN149 4.8 41.4 1.0
HD3 C:LYS147 4.8 72.0 1.0
O C:GLY146 4.8 39.6 1.0
HA C:GLU150 4.9 43.4 1.0
HG3 C:LYS147 5.0 54.2 1.0
OE1 C:GLU150 5.0 55.1 1.0

Chlorine binding site 6 out of 9 in 8fyv

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Chlorine binding site 6 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl203

b:41.3
occ:1.00
 HB3 C:SER158 2.7 32.9 1.0
H C:SER158 2.8 37.9 1.0
HB2 C:PRO155 2.9 39.4 1.0
HA C:PRO155 2.9 37.8 1.0
HB3 C:GLN157 3.0 34.0 1.0
HB3 C:PRO155 3.1 39.4 1.0
O C:HOH355 3.2 34.7 1.0
CB C:PRO155 3.3 32.4 1.0
CA C:PRO155 3.3 31.0 1.0
N C:SER158 3.4 31.1 1.0
O B:HOH361 3.5 44.8 1.0
CB C:SER158 3.6 27.0 1.0
C C:PRO155 3.6 31.9 1.0
O D:HOH331 3.7 28.4 1.0
H C:GLN157 3.7 33.4 1.0
O C:PRO155 3.7 30.6 1.0
HG C:SER158 3.8 43.7 1.0
CB C:GLN157 3.9 27.9 1.0
CA C:SER158 4.0 28.9 1.0
N C:GLN157 4.1 27.4 1.0
OG C:SER158 4.1 35.9 1.0
C C:GLN157 4.2 32.1 1.0
O C:HOH322 4.2 28.3 1.0
CA C:GLN157 4.3 28.6 1.0
HB2 C:GLN157 4.3 34.0 1.0
HA C:SER158 4.3 35.3 1.0
HB2 C:SER158 4.3 32.9 1.0
N C:THR156 4.5 32.1 1.0
CG C:PRO155 4.7 32.9 1.0
N C:PRO155 4.8 31.4 1.0
H C:THR156 4.8 39.1 1.0
CG C:GLN157 4.9 31.9 1.0
O B:HOH360 4.9 43.1 1.0
C C:THR156 4.9 27.4 1.0
HG3 C:GLN157 4.9 38.8 1.0
HG2 C:GLN157 5.0 38.8 1.0

Chlorine binding site 7 out of 9 in 8fyv

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Chlorine binding site 7 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl202

b:47.6
occ:1.00
 H D:GLU150 2.5 51.4 1.0
HB2 D:ASN149 2.7 52.6 1.0
H D:ASN149 2.7 53.6 1.0
HA D:LYS147 2.9 51.3 1.0
HB3 D:LYS147 3.0 53.1 1.0
N D:GLU150 3.3 42.3 1.0
N D:ASN149 3.4 44.2 1.0
HD22 D:ASN149 3.4 59.9 1.0
CA D:LYS147 3.5 42.3 1.0
HB2 D:GLU150 3.5 59.8 1.0
CB D:ASN149 3.5 43.4 1.0
HG2 D:LYS147 3.6 54.8 1.0
C D:LYS147 3.6 42.9 1.0
CB D:LYS147 3.6 43.7 1.0
H D:ILE148 3.7 47.1 1.0
N D:ILE148 3.7 38.8 1.0
CA D:ASN149 3.8 44.2 1.0
HB3 D:GLU150 3.9 59.8 1.0
CB D:GLU150 4.0 49.4 1.0
C D:ASN149 4.1 42.8 1.0
CG D:LYS147 4.1 45.2 1.0
HB3 D:ASN149 4.1 52.6 1.0
O D:LYS147 4.1 44.3 1.0
ND2 D:ASN149 4.2 49.5 1.0
CA D:GLU150 4.3 43.3 1.0
C D:ILE148 4.4 40.4 1.0
HG22 D:ILE148 4.4 50.5 1.0
CG D:ASN149 4.4 46.1 1.0
HB2 D:LYS147 4.4 53.1 1.0
H D:PHE151 4.6 47.6 1.0
CA D:ILE148 4.7 40.9 1.0
HG3 D:LYS147 4.7 54.8 1.0
HA D:ASN149 4.8 53.6 1.0
N D:LYS147 4.8 41.1 1.0
HA D:GLU150 4.9 52.5 1.0
HD21 D:ASN149 4.9 59.9 1.0
O D:GLY146 5.0 42.6 1.0
OE1 D:GLU150 5.0 63.6 1.0

Chlorine binding site 8 out of 9 in 8fyv

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Chlorine binding site 8 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl203

b:45.3
occ:1.00
 HB3 D:GLN157 2.8 43.9 1.0
H D:SER158 2.9 38.4 1.0
HA D:PRO155 3.1 43.0 1.0
HB3 D:SER158 3.1 38.5 1.0
HB2 D:PRO155 3.4 41.6 1.0
N D:SER158 3.5 31.6 1.0
HB3 D:PRO155 3.5 41.6 1.0
HG D:SER158 3.5 42.4 1.0
O C:HOH331 3.5 36.8 1.0
H D:GLN157 3.6 38.8 1.0
CA D:PRO155 3.6 35.3 1.0
CB D:PRO155 3.7 34.2 1.0
CB D:GLN157 3.8 36.1 1.0
CB D:SER158 3.9 31.6 1.0
C D:PRO155 3.9 33.5 1.0
O D:PRO155 4.0 31.3 1.0
OG D:SER158 4.0 34.9 1.0
N D:GLN157 4.1 31.9 1.0
HB2 D:GLN157 4.2 43.9 1.0
O D:HOH318 4.2 34.7 1.0
C D:GLN157 4.2 31.5 1.0
CA D:SER158 4.2 32.9 1.0
CA D:GLN157 4.2 31.8 1.0
HA D:SER158 4.5 40.0 1.0
N D:THR156 4.6 33.5 1.0
HB2 D:SER158 4.7 38.5 1.0
CG D:GLN157 4.8 37.2 1.0
HG2 D:GLN157 4.8 45.2 1.0
HG3 D:GLN157 4.8 45.2 1.0
H D:THR156 4.9 40.8 1.0

Chlorine binding site 9 out of 9 in 8fyv

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Chlorine binding site 9 out of 9 in the Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl201

b:53.7
occ:1.00
 HB3 E:GLN157 2.8 43.0 1.0
HA E:PRO155 2.8 49.9 1.0
H E:SER158 3.1 43.2 1.0
HB3 E:PRO155 3.3 51.9 1.0
HB2 E:PRO155 3.3 51.9 1.0
CA E:PRO155 3.4 41.1 1.0
H E:GLN157 3.4 40.6 1.0
CB E:PRO155 3.5 42.8 1.0
HG E:SER158 3.6 48.6 1.0
CB E:GLN157 3.7 37.6 1.0
HB3 E:SER158 3.7 43.2 1.0
O E:HOH308 3.7 40.1 1.0
C E:PRO155 3.7 40.7 1.0
N E:SER158 3.7 35.5 1.0
HB2 E:GLN157 3.9 43.0 1.0
O E:PRO155 3.9 34.6 1.0
N E:GLN157 4.0 36.2 1.0
CA E:GLN157 4.2 35.8 1.0
OG E:SER158 4.3 40.0 1.0
CB E:SER158 4.3 35.5 1.0
C E:GLN157 4.4 34.6 1.0
N E:THR156 4.5 37.9 1.0
CA E:SER158 4.6 37.5 1.0
H E:THR156 4.7 46.1 1.0
N E:PRO155 4.7 42.8 1.0
CG E:GLN157 4.8 37.7 1.0
HG2 E:GLN157 4.8 45.2 1.0
HG3 E:GLN157 4.9 45.2 1.0
HA E:SER158 4.9 45.6 1.0
C E:THR156 4.9 36.5 1.0
CG E:PRO155 5.0 41.4 1.0

Reference:

A.Baylink, Z.Gentry-Lear, S.Glenn. Bacterial Vampirism Mediated By Chemotaxis To Be Published.
Page generated: Tue Jul 30 09:51:56 2024

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