Chlorine in PDB 8gol: Crystal Structure of Sule
Protein crystallography data
The structure of Crystal Structure of Sule, PDB code: 8gol
was solved by
B.Liu,
T.Ran,
W.Wang,
J.He,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.78 /
1.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.422,
166.661,
76.965,
90,
109.74,
90
|
R / Rfree (%)
|
15.1 /
18.1
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Sule
(pdb code 8gol). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Sule, PDB code: 8gol:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 8gol
Go back to
Chlorine Binding Sites List in 8gol
Chlorine binding site 1 out
of 4 in the Crystal Structure of Sule
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Sule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl401
b:61.4
occ:1.00
|
CL
|
A:IJC401
|
0.0
|
61.4
|
1.0
|
C9
|
A:IJC401
|
1.8
|
35.9
|
1.0
|
O
|
A:HOH863
|
2.7
|
32.9
|
1.0
|
N2
|
A:IJC401
|
2.7
|
35.6
|
1.0
|
C10
|
A:IJC401
|
2.8
|
34.7
|
1.0
|
O
|
A:HOH879
|
2.9
|
36.4
|
1.0
|
O
|
A:HOH589
|
3.1
|
23.3
|
1.0
|
O
|
A:HOH576
|
3.6
|
24.5
|
1.0
|
CD
|
A:PRO258
|
4.0
|
20.0
|
1.0
|
C8
|
A:IJC401
|
4.0
|
40.0
|
1.0
|
C11
|
A:IJC401
|
4.0
|
33.6
|
1.0
|
O
|
A:HOH848
|
4.2
|
33.1
|
1.0
|
CG
|
A:PHE257
|
4.2
|
16.8
|
1.0
|
CD1
|
A:PHE257
|
4.3
|
20.7
|
1.0
|
CB
|
A:PHE257
|
4.3
|
13.4
|
1.0
|
N3
|
A:IJC401
|
4.5
|
37.0
|
1.0
|
O
|
A:HOH840
|
4.7
|
36.7
|
1.0
|
CD2
|
A:PHE257
|
4.7
|
17.0
|
1.0
|
CA
|
A:PHE257
|
4.8
|
14.6
|
1.0
|
CE1
|
A:PHE257
|
4.8
|
23.2
|
1.0
|
CG
|
A:PRO258
|
4.9
|
23.1
|
1.0
|
N
|
A:PRO258
|
4.9
|
15.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 8gol
Go back to
Chlorine Binding Sites List in 8gol
Chlorine binding site 2 out
of 4 in the Crystal Structure of Sule
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Sule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl401
b:66.2
occ:1.00
|
CL
|
B:IJC401
|
0.0
|
66.2
|
1.0
|
C9
|
B:IJC401
|
1.8
|
40.0
|
1.0
|
C10
|
B:IJC401
|
2.7
|
38.4
|
1.0
|
N2
|
B:IJC401
|
2.8
|
38.6
|
1.0
|
O
|
B:HOH854
|
3.0
|
31.8
|
1.0
|
O
|
B:HOH560
|
3.6
|
25.3
|
1.0
|
O
|
B:HOH826
|
3.6
|
35.8
|
1.0
|
CD
|
B:PRO258
|
3.7
|
18.9
|
1.0
|
CD1
|
B:PHE257
|
4.0
|
20.4
|
1.0
|
C8
|
B:IJC401
|
4.0
|
39.1
|
1.0
|
C11
|
B:IJC401
|
4.0
|
40.1
|
1.0
|
CG
|
B:PHE257
|
4.2
|
14.4
|
1.0
|
O
|
B:HOH555
|
4.3
|
25.6
|
1.0
|
CE1
|
B:PHE257
|
4.4
|
22.9
|
1.0
|
CB
|
B:PHE257
|
4.5
|
14.7
|
1.0
|
N3
|
B:IJC401
|
4.5
|
36.4
|
1.0
|
CA
|
B:PHE257
|
4.6
|
13.1
|
1.0
|
CG
|
B:PRO258
|
4.6
|
20.8
|
1.0
|
N
|
B:PRO258
|
4.8
|
16.9
|
1.0
|
CD2
|
B:PHE257
|
4.9
|
14.4
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 8gol
Go back to
Chlorine Binding Sites List in 8gol
Chlorine binding site 3 out
of 4 in the Crystal Structure of Sule
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Sule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl401
b:61.7
occ:1.00
|
CL
|
C:IJC401
|
0.0
|
61.7
|
1.0
|
C9
|
C:IJC401
|
1.8
|
37.7
|
1.0
|
C10
|
C:IJC401
|
2.7
|
36.9
|
1.0
|
N2
|
C:IJC401
|
2.8
|
31.9
|
1.0
|
O
|
C:HOH847
|
3.0
|
33.0
|
1.0
|
O
|
C:HOH528
|
3.6
|
26.7
|
1.0
|
O
|
C:HOH819
|
3.6
|
31.2
|
1.0
|
CD
|
C:PRO258
|
3.9
|
21.4
|
1.0
|
O
|
C:HOH608
|
3.9
|
24.0
|
1.0
|
C8
|
C:IJC401
|
4.0
|
38.9
|
1.0
|
CD1
|
C:PHE257
|
4.0
|
20.4
|
1.0
|
C11
|
C:IJC401
|
4.0
|
34.3
|
1.0
|
CG
|
C:PHE257
|
4.2
|
18.3
|
1.0
|
CB
|
C:PHE257
|
4.4
|
17.4
|
1.0
|
N3
|
C:IJC401
|
4.5
|
36.5
|
1.0
|
CE1
|
C:PHE257
|
4.5
|
21.7
|
1.0
|
CA
|
C:PHE257
|
4.6
|
16.1
|
1.0
|
CG
|
C:PRO258
|
4.7
|
21.1
|
1.0
|
CD2
|
C:PHE257
|
4.8
|
16.6
|
1.0
|
N
|
C:PRO258
|
4.8
|
16.4
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 8gol
Go back to
Chlorine Binding Sites List in 8gol
Chlorine binding site 4 out
of 4 in the Crystal Structure of Sule
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Sule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl401
b:64.1
occ:1.00
|
CL
|
D:IJC401
|
0.0
|
64.1
|
1.0
|
C9
|
D:IJC401
|
1.8
|
35.3
|
1.0
|
N2
|
D:IJC401
|
2.7
|
37.2
|
1.0
|
C10
|
D:IJC401
|
2.8
|
38.3
|
1.0
|
O
|
D:HOH854
|
2.8
|
35.8
|
1.0
|
O
|
D:HOH844
|
3.1
|
31.3
|
1.0
|
O
|
D:HOH626
|
3.3
|
26.0
|
1.0
|
CD
|
D:PRO258
|
3.7
|
22.3
|
1.0
|
O
|
D:HOH583
|
3.9
|
21.6
|
1.0
|
CD1
|
D:PHE257
|
4.0
|
20.3
|
1.0
|
C8
|
D:IJC401
|
4.0
|
35.5
|
1.0
|
C11
|
D:IJC401
|
4.0
|
35.1
|
1.0
|
CG
|
D:PHE257
|
4.1
|
15.5
|
1.0
|
CB
|
D:PHE257
|
4.2
|
15.6
|
1.0
|
N3
|
D:IJC401
|
4.5
|
41.2
|
1.0
|
CA
|
D:PHE257
|
4.5
|
17.5
|
1.0
|
CE1
|
D:PHE257
|
4.5
|
23.5
|
1.0
|
CG
|
D:PRO258
|
4.6
|
22.3
|
1.0
|
CD2
|
D:PHE257
|
4.7
|
15.2
|
1.0
|
N
|
D:PRO258
|
4.7
|
17.8
|
1.0
|
|
Reference:
B.Liu,
W.Wang,
J.Qiu,
X.Huang,
S.Qiu,
Y.Bao,
S.Xu,
L.Ruan,
T.Ran,
J.He.
Crystal Structures of Herbicide-Detoxifying Esterase Reveal A Lid Loop Affecting Substrate Binding and Activity. Nat Commun V. 14 4343 2023.
ISSN: ESSN 2041-1723
PubMed: 37468532
DOI: 10.1038/S41467-023-40103-5
Page generated: Tue Jul 30 10:06:32 2024
|