Chlorine in PDB 8izj: Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp

Enzymatic activity of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp

All present enzymatic activity of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp, PDB code: 8izj was solved by P.Yadav, G.S.Kushwaha, N.S.Bhavesh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.59 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.752, 86.942, 48.664, 90, 110.48, 90
R / Rfree (%) 16.5 / 19.2

Other elements in 8izj:

The structure of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp (pdb code 8izj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp, PDB code: 8izj:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8izj

Go back to Chlorine Binding Sites List in 8izj
Chlorine binding site 1 out of 4 in the Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:19.2
occ:1.00
 O A:HOH498 3.0 23.8 1.0
NH2 A:ARG144 3.2 14.1 1.0
N A:SER97 3.2 12.9 1.0
O A:SER97 3.6 13.5 1.0
CA A:ILE96 3.8 12.4 1.0
CB A:ILE96 3.9 13.0 1.0
NH1 A:ARG144 3.9 14.9 1.0
CB A:SER97 4.0 12.5 1.0
CZ A:ARG144 4.0 13.6 1.0
C A:ILE96 4.0 14.2 1.0
CA A:SER97 4.0 12.8 1.0
CG2 A:ILE96 4.1 14.2 1.0
C A:SER97 4.3 12.9 1.0
O A:HOH332 4.3 31.3 1.0
O A:HOH375 4.8 16.9 1.0

Chlorine binding site 2 out of 4 in 8izj

Go back to Chlorine Binding Sites List in 8izj
Chlorine binding site 2 out of 4 in the Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:24.1
occ:1.00
 O A:HOH438 3.0 44.1 1.0
N A:ALA65 3.2 16.0 1.0
N A:ARG66 3.2 15.3 1.0
NH2 B:ARG86 3.4 19.7 1.0
NH1 B:ARG86 3.8 21.1 1.0
CB A:ALA65 3.8 16.8 1.0
CG A:ARG66 3.9 21.5 1.0
CA A:ALA65 3.9 15.5 1.0
CB A:ARG66 3.9 17.6 1.0
CZ A:ARG66 3.9 28.7 1.0
C A:ALA65 4.0 14.1 1.0
CZ B:ARG86 4.0 19.5 1.0
NE A:ARG66 4.0 24.1 1.0
O A:GLU64 4.1 18.4 1.0
C A:GLU64 4.1 15.7 1.0
NH1 A:ARG66 4.1 28.1 1.0
CA A:ARG66 4.2 15.7 1.0
O A:HOH338 4.2 23.1 1.0
NH2 A:ARG66 4.3 28.7 1.0
CD A:ARG66 4.5 23.8 1.0

Chlorine binding site 3 out of 4 in 8izj

Go back to Chlorine Binding Sites List in 8izj
Chlorine binding site 3 out of 4 in the Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:19.2
occ:1.00
 NH2 B:ARG29 3.3 15.9 1.0
NH1 B:ARG29 3.3 14.9 1.0
CZ B:ARG29 3.7 15.6 1.0
CD B:PRO181 3.9 17.1 1.0
CG B:PRO181 4.0 16.2 1.0
O B:HOH361 4.0 26.0 1.0
CD1 B:PHE180 4.0 16.0 1.0
CE1 B:PHE180 4.5 17.2 1.0
CD2 B:LEU27 4.6 16.8 1.0

Chlorine binding site 4 out of 4 in 8izj

Go back to Chlorine Binding Sites List in 8izj
Chlorine binding site 4 out of 4 in the Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:25.6
occ:1.00
 O B:HOH421 3.1 34.0 1.0
N B:ALA65 3.2 18.2 1.0
NH2 A:ARG86 3.3 20.5 1.0
N B:ARG66 3.4 13.0 1.0
O A:HOH489 3.7 39.9 1.0
NH1 A:ARG86 3.7 19.6 1.0
CG B:ARG66 3.8 19.4 1.0
CZ B:ARG66 3.9 30.7 1.0
CB B:ALA65 3.9 15.5 1.0
CA B:ALA65 4.0 15.4 1.0
CZ A:ARG86 4.0 18.6 1.0
NE B:ARG66 4.0 25.9 1.0
C B:ALA65 4.1 14.2 1.0
O B:GLU64 4.1 22.1 1.0
NH2 B:ARG66 4.1 31.9 1.0
CB B:ARG66 4.1 17.0 1.0
C B:GLU64 4.1 19.7 1.0
O B:HOH356 4.2 20.0 1.0
NH1 B:ARG66 4.3 27.4 1.0
CA B:ARG66 4.3 14.9 1.0
CE A:LYS90 4.4 29.9 1.0
CD B:ARG66 4.4 23.4 1.0
NZ A:LYS90 4.5 36.6 1.0

Reference:

P.Yadav, G.S.Kushwaha, N.S.Bhavesh. Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp To Be Published.
Page generated: Tue Jul 30 10:52:54 2024

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