Atomistry » Chlorine » PDB 8k8j-8okf » 8kb7
Atomistry »
  Chlorine »
    PDB 8k8j-8okf »
      8kb7 »

Chlorine in PDB 8kb7: Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)

Enzymatic activity of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)

All present enzymatic activity of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2):
2.4.1.312;

Protein crystallography data

The structure of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2), PDB code: 8kb7 was solved by T.Satoh, F.Umezawa, H.Yagi, K.Kato, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.92 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 145.019, 150.002, 191.481, 90, 90, 90
R / Rfree (%) 19.1 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) (pdb code 8kb7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2), PDB code: 8kb7:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8kb7

Go back to Chlorine Binding Sites List in 8kb7
Chlorine binding site 1 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:108.4
occ:1.00
 NZ A:LYS82 3.6 100.3 1.0
NH2 A:ARG80 3.6 106.2 1.0
NH1 A:ARG80 4.2 87.1 1.0
CZ A:ARG80 4.4 81.4 1.0
CB B:ALA186 4.5 84.5 1.0
N B:GLY184 4.7 83.3 1.0
CE A:LYS82 4.7 98.8 1.0
CD2 B:HIS187 5.0 127.0 1.0

Chlorine binding site 2 out of 4 in 8kb7

Go back to Chlorine Binding Sites List in 8kb7
Chlorine binding site 2 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl604

b:100.7
occ:1.00
 NZ B:LYS82 3.2 117.6 1.0
NH2 B:ARG80 3.4 83.7 1.0
CZ B:ARG80 4.3 77.7 1.0
NH1 B:ARG80 4.3 104.1 1.0
CE B:LYS82 4.4 105.1 1.0
N A:GLY184 4.8 78.5 1.0
CB A:ALA186 4.8 98.4 1.0

Chlorine binding site 3 out of 4 in 8kb7

Go back to Chlorine Binding Sites List in 8kb7
Chlorine binding site 3 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl605

b:112.7
occ:1.00
 NZ C:LYS82 3.5 120.1 1.0
NH2 C:ARG80 3.5 99.2 1.0
NH1 C:ARG80 4.3 88.3 1.0
CZ C:ARG80 4.4 86.2 1.0
CE C:LYS82 4.5 116.7 1.0
N D:GLY184 4.5 99.3 1.0
CD2 D:HIS187 4.7 143.6 1.0
CB D:ALA186 4.8 93.3 1.0
NE2 D:HIS187 4.9 137.2 1.0

Chlorine binding site 4 out of 4 in 8kb7

Go back to Chlorine Binding Sites List in 8kb7
Chlorine binding site 4 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl604

b:105.2
occ:1.00
 NZ D:LYS82 3.1 118.4 1.0
NH2 D:ARG80 4.0 95.8 1.0
CE D:LYS82 4.4 110.5 1.0
NE2 C:HIS187 4.4 138.6 1.0
CB C:ALA186 4.5 103.3 1.0
CD2 C:HIS187 4.6 138.3 1.0
NH1 D:ARG80 4.7 95.4 1.0
CZ D:ARG80 4.8 85.2 1.0

Reference:

T.Satoh, F.Umezawa, H.Yagi, K.Kato. Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N-Acetylglucosaminyltransferase 2 (POMGNT2) To Be Published.
Page generated: Sun Aug 11 10:51:00 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy