Chlorine in PDB 8kb7: Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)

Enzymatic activity of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)

All present enzymatic activity of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2):
2.4.1.312;

Protein crystallography data

The structure of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2), PDB code: 8kb7 was solved by T.Satoh, F.Umezawa, H.Yagi, K.Kato, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.92 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 145.019, 150.002, 191.481, 90, 90, 90
R / Rfree (%) 19.1 / 22.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) (pdb code 8kb7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2), PDB code: 8kb7:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8kb7

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Chlorine binding site 1 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:108.4
occ:1.00
 NZ A:LYS82 3.6 100.3 1.0
NH2 A:ARG80 3.6 106.2 1.0
NH1 A:ARG80 4.2 87.1 1.0
CZ A:ARG80 4.4 81.4 1.0
CB B:ALA186 4.5 84.5 1.0
N B:GLY184 4.7 83.3 1.0
CE A:LYS82 4.7 98.8 1.0
CD2 B:HIS187 5.0 127.0 1.0

Chlorine binding site 2 out of 4 in 8kb7

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Chlorine binding site 2 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl604

b:100.7
occ:1.00
 NZ B:LYS82 3.2 117.6 1.0
NH2 B:ARG80 3.4 83.7 1.0
CZ B:ARG80 4.3 77.7 1.0
NH1 B:ARG80 4.3 104.1 1.0
CE B:LYS82 4.4 105.1 1.0
N A:GLY184 4.8 78.5 1.0
CB A:ALA186 4.8 98.4 1.0

Chlorine binding site 3 out of 4 in 8kb7

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Chlorine binding site 3 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl605

b:112.7
occ:1.00
 NZ C:LYS82 3.5 120.1 1.0
NH2 C:ARG80 3.5 99.2 1.0
NH1 C:ARG80 4.3 88.3 1.0
CZ C:ARG80 4.4 86.2 1.0
CE C:LYS82 4.5 116.7 1.0
N D:GLY184 4.5 99.3 1.0
CD2 D:HIS187 4.7 143.6 1.0
CB D:ALA186 4.8 93.3 1.0
NE2 D:HIS187 4.9 137.2 1.0

Chlorine binding site 4 out of 4 in 8kb7

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Chlorine binding site 4 out of 4 in the Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N- Acetylglucosaminyltransferase 2 (POMGNT2) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl604

b:105.2
occ:1.00
 NZ D:LYS82 3.1 118.4 1.0
NH2 D:ARG80 4.0 95.8 1.0
CE D:LYS82 4.4 110.5 1.0
NE2 C:HIS187 4.4 138.6 1.0
CB C:ALA186 4.5 103.3 1.0
CD2 C:HIS187 4.6 138.3 1.0
NH1 D:ARG80 4.7 95.4 1.0
CZ D:ARG80 4.8 85.2 1.0

Reference:

T.Satoh, F.Umezawa, H.Yagi, K.Kato. Crystal Structure of Udp/Mannose-Bound AGO61/Beta-1,4-N-Acetylglucosaminyltransferase 2 (POMGNT2) To Be Published.
Page generated: Sun Aug 11 10:51:00 2024

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