Chlorine in PDB 8ok3: Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre

Protein crystallography data

The structure of Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre, PDB code: 8ok3 was solved by S.G.Caulton, A.L.Lovering, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.75 / 1.50
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 68.76, 68.76, 68.76, 90, 90, 90
R / Rfree (%) 15 / 15.9

Other elements in 8ok3:

The structure of Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre (pdb code 8ok3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre, PDB code: 8ok3:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8ok3

Go back to Chlorine Binding Sites List in 8ok3
Chlorine binding site 1 out of 2 in the Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1103

b:15.6
occ:1.00
ND1 A:HIS953 3.1 17.9 1.0
NE A:ARG951 3.2 13.7 1.0
ND2 A:ASN1024 3.2 17.1 1.0
NH2 A:ARG951 3.3 16.5 1.0
CA A:CYS952 3.4 11.0 1.0
C A:CYS952 3.6 12.4 1.0
N A:CYS952 3.6 10.5 1.0
O A:ARG951 3.7 12.2 1.0
CZ A:ARG951 3.7 15.6 1.0
C A:ARG951 3.7 12.1 1.0
N A:HIS953 3.7 12.6 1.0
O A:GLY1022 3.8 15.1 1.0
C A:GLY1022 3.9 18.2 1.0
CE1 A:HIS953 3.9 22.4 1.0
N A:ASN1024 4.0 13.6 1.0
N A:CYS1023 4.1 14.3 1.0
CA A:CYS1023 4.1 14.9 0.6
CA A:CYS1023 4.1 15.0 0.4
CG A:HIS953 4.2 15.5 1.0
O A:CYS952 4.2 12.1 1.0
CG A:ARG951 4.2 15.8 1.0
CG A:ASN1024 4.3 18.6 1.0
CD A:ARG951 4.3 13.3 1.0
CB A:ARG951 4.3 11.4 1.0
CB A:ASN1024 4.4 13.4 1.0
CB A:HIS953 4.4 13.8 1.0
C A:CYS1023 4.4 16.1 1.0
CA A:GLY1022 4.6 21.9 1.0
CA A:ARG951 4.7 11.1 1.0
CA A:HIS953 4.7 12.6 1.0
CB A:CYS952 4.8 10.5 1.0
CA A:ASN1024 4.9 13.2 1.0

Chlorine binding site 2 out of 2 in 8ok3

Go back to Chlorine Binding Sites List in 8ok3
Chlorine binding site 2 out of 2 in the Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1104

b:12.2
occ:0.33
NA A:NA1102 2.5 12.1 0.3
N A:TYR993 3.5 11.3 1.0
CA A:GLY992 3.5 11.6 1.0
O A:TYR993 3.8 12.1 1.0
C A:GLY992 4.0 12.9 1.0
O A:HOH1236 4.4 25.4 1.0
CD2 A:TYR993 4.5 12.0 1.0
CA A:TYR993 4.6 11.0 1.0
C A:TYR993 4.6 12.1 1.0
O A:VAL991 4.7 15.5 1.0
N A:GLY992 4.8 12.6 1.0
CE2 A:TYR993 4.8 12.0 1.0
CG A:TYR993 4.8 11.1 1.0

Reference:

S.G.Caulton, A.L.Lovering. Structure of the C-Terminal Domain of the Bdellovibrio Bacteriovorus BD2133 Fibre To Be Published.
Page generated: Tue Jul 30 11:10:01 2024

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