Atomistry » Chlorine » PDB 8or1-8pfy » 8ori
Atomistry »
  Chlorine »
    PDB 8or1-8pfy »
      8ori »

Chlorine in PDB 8ori: Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)

Protein crystallography data

The structure of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic), PDB code: 8ori was solved by J.Loch, P.Worsztynowicz, J.Sliwiak, B.Imiolczyk, M.Grzechowiak, M.Gilski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.42 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.2, 89.881, 169.797, 90, 90, 90
R / Rfree (%) 13 / 17.7

Other elements in 8ori:

The structure of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) (pdb code 8ori). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 10 binding sites of Chlorine where determined in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic), PDB code: 8ori:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 1 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:26.0
occ:1.00
 O A:HOH813 2.8 38.4 1.0
O A:HOH736 3.0 45.7 1.0
O A:HOH809 3.0 29.8 1.0
N A:GLU214 3.3 18.6 1.0
CD A:ARG172 3.3 53.0 1.0
CA A:LEU213 3.8 17.1 1.0
CD A:ARG217 3.9 17.6 1.0
NH1 A:ARG217 3.9 22.6 1.0
CB A:GLU214 3.9 27.4 1.0
CB A:ARG217 3.9 15.2 1.0
CG A:GLU214 4.0 35.8 1.0
C A:LEU213 4.1 18.1 1.0
CD2 A:LEU213 4.1 19.2 1.0
CG A:ARG172 4.2 42.3 1.0
CA A:GLU214 4.2 19.3 1.0
CB A:LEU213 4.3 17.2 1.0
CG A:ARG217 4.3 17.0 1.0
NH2 A:ARG172 4.3 68.3 1.0
NE A:ARG172 4.3 61.2 1.0
NE A:ARG217 4.5 18.5 1.0
CZ A:ARG217 4.5 19.4 1.0
O A:GLY212 4.6 27.4 1.0
CZ A:ARG172 4.7 66.0 1.0
CG A:LEU213 4.8 18.2 1.0
O A:GLU214 4.9 15.8 1.0
CB A:ARG172 5.0 29.7 1.0

Chlorine binding site 2 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 2 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl405

b:28.6
occ:1.00
 O A:HOH811 3.0 31.0 1.0
O A:HOH751 3.0 25.6 1.0
N A:ARG284 3.1 11.9 1.0
N A:THR283 3.5 14.1 1.0
CG A:ARG284 3.5 12.7 1.0
CB A:ARG284 3.6 12.1 1.0
CB A:ALA282 3.9 16.0 1.0
CA A:ARG284 3.9 11.9 1.0
CD A:ARG284 4.0 12.4 1.0
C A:THR283 4.0 12.6 1.0
CA A:THR283 4.0 12.3 1.0
CB A:THR283 4.1 17.0 1.0
C A:ALA282 4.1 12.4 1.0
CA A:ALA282 4.2 12.2 1.0
O A:HOH778 4.4 51.3 1.0
OG1 A:THR283 4.7 23.6 1.0
NE A:ARG284 4.7 11.8 1.0
O A:ALA282 5.0 12.7 1.0

Chlorine binding site 3 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 3 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:14.0
occ:1.00
 O B:HOH1093 3.1 29.0 1.0
NH2 B:ARG198 3.3 15.5 1.0
N B:LEU32 3.3 12.5 1.0
CB B:LEU32 3.9 12.8 1.0
CA B:LYS31 4.1 14.0 1.0
CA B:LEU32 4.2 12.3 1.0
C B:LYS31 4.2 13.8 1.0
CG B:LYS31 4.3 21.1 1.0
CZ B:ARG198 4.4 15.5 1.0
O B:GLY30 4.6 17.5 1.0
NH1 B:ARG198 4.6 16.1 1.0
O B:LEU32 4.7 17.9 1.0
CB B:LYS31 4.8 15.9 1.0
C B:LEU32 4.9 12.1 1.0

Chlorine binding site 4 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 4 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl705

b:22.8
occ:1.00
 NH2 B:ARG172 2.8 50.5 1.0
CZ B:ARG172 3.1 52.0 1.0
O B:HOH1119 3.2 36.6 1.0
N B:GLU214 3.3 17.2 1.0
NE B:ARG172 3.3 47.5 1.0
NH1 B:ARG217 3.7 22.4 1.0
CD B:ARG217 3.7 17.2 1.0
CA B:LEU213 3.8 15.1 1.0
CG B:GLU214 3.8 32.0 1.0
CB B:GLU214 3.9 23.8 1.0
NH1 B:ARG172 4.0 56.1 1.0
C B:LEU213 4.0 16.1 1.0
CB B:ARG217 4.0 14.7 1.0
CD2 B:LEU213 4.1 18.2 1.0
CA B:GLU214 4.2 17.6 1.0
CB B:LEU213 4.2 14.8 1.0
CG B:ARG217 4.3 15.6 1.0
CZ B:ARG217 4.3 20.7 1.0
NE B:ARG217 4.3 16.5 1.0
CD B:ARG172 4.4 39.1 1.0
O B:GLY212 4.6 25.3 1.0
CB B:ARG172 4.7 25.0 1.0
CG B:LEU213 4.8 15.7 1.0
CG B:ARG172 4.8 33.4 1.0
O B:GLU214 5.0 16.9 1.0

Chlorine binding site 5 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 5 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:23.3
occ:1.00
 O C:HOH840 3.0 34.1 1.0
NH1 C:ARG172 3.1 68.5 1.0
N C:GLU214 3.3 15.8 1.0
CG C:ARG172 3.6 41.1 1.0
CD C:ARG172 3.7 51.9 1.0
CD C:ARG217 3.8 17.1 1.0
CA C:LEU213 3.8 16.6 1.0
NH1 C:ARG217 3.8 21.5 1.0
CB C:GLU214 3.9 19.6 1.0
CG C:GLU214 3.9 26.9 1.0
CB C:ARG217 4.0 14.4 1.0
C C:LEU213 4.1 16.4 1.0
CD2 C:LEU213 4.1 18.5 1.0
CZ C:ARG172 4.2 66.3 1.0
CA C:GLU214 4.2 15.6 1.0
CG C:ARG217 4.2 15.2 1.0
CB C:LEU213 4.3 16.0 1.0
NE C:ARG172 4.4 59.8 1.0
NE C:ARG217 4.5 17.1 1.0
CZ C:ARG217 4.5 17.8 1.0
O C:GLY212 4.5 24.8 1.0
O C:HOH803 4.8 28.2 1.0
CG C:LEU213 4.8 16.0 1.0
CB C:ARG172 4.9 27.5 1.0
O C:GLU214 5.0 14.3 1.0

Chlorine binding site 6 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 6 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl404

b:37.4
occ:1.00
 N C:GLY37 3.0 13.6 1.0
O C:HOH526 3.9 37.6 1.0
CG C:PRO4 3.9 16.4 1.0
CA C:LEU36 3.9 14.1 1.0
CA C:GLY37 3.9 14.9 1.0
C C:LEU36 4.0 13.0 1.0
CD C:PRO4 4.0 15.2 1.0
CG2 C:THR0 4.2 45.9 1.0
CD2 C:LEU36 4.4 20.9 1.0
CB C:PRO4 4.4 15.5 1.0
CB C:LEU36 4.5 16.6 1.0
O C:HOH623 4.6 21.7 1.0
C C:GLY37 5.0 14.4 1.0

Chlorine binding site 7 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 7 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl405

b:30.9
occ:1.00
 O C:HOH950 3.0 42.6 1.0
O C:HOH891 3.1 27.3 1.0
N C:ALA129 3.1 13.0 1.0
O C:HOH695 3.4 23.4 1.0
CB C:ALA129 3.8 13.2 1.0
CB C:THR128 3.8 15.6 1.0
CA C:THR128 3.8 14.4 1.0
C C:THR128 3.9 13.4 1.0
CG2 C:VAL101 4.0 17.2 1.0
CA C:ALA129 4.0 12.9 1.0
CG2 C:THR128 4.6 19.5 1.0
OG1 C:THR128 4.7 16.4 1.0
O C:HOH932 4.8 42.8 1.0
O C:HOH720 4.9 17.1 1.0

Chlorine binding site 8 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 8 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl403

b:28.6
occ:1.00
 NH1 D:ARG172 2.9 66.2 1.0
N D:GLU214 3.4 26.1 1.0
CZ D:ARG172 3.5 61.8 1.0
CD D:ARG217 3.7 17.5 1.0
CG D:ARG172 3.8 33.3 1.0
NH1 D:ARG217 3.8 22.3 1.0
CG D:GLU214 3.9 43.9 1.0
CA D:LEU213 3.9 23.9 1.0
CB D:GLU214 4.0 35.0 1.0
CB D:ARG217 4.0 16.2 1.0
NE D:ARG172 4.1 53.3 1.0
CD2 D:LEU213 4.1 22.3 1.0
O D:HOH781 4.1 37.3 1.0
C D:LEU213 4.2 24.3 1.0
CD D:ARG172 4.2 42.6 1.0
NH2 D:ARG172 4.2 64.6 1.0
CA D:GLU214 4.3 28.4 1.0
CG D:ARG217 4.3 17.2 1.0
NE D:ARG217 4.3 18.1 1.0
CB D:LEU213 4.4 19.9 1.0
CZ D:ARG217 4.4 19.9 1.0
O D:GLY212 4.7 32.9 1.0
CG D:LEU213 4.9 20.9 1.0
O D:GLU214 5.0 20.7 1.0

Chlorine binding site 9 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 9 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl404

b:14.6
occ:1.00
 O D:HOH525 3.2 41.2 0.5
O D:HOH639 3.2 16.4 1.0
NH2 D:ARG198 3.2 11.3 0.6
N D:LEU32 3.3 13.9 1.0
O D:HOH882 3.5 36.8 1.0
CB D:LEU32 3.8 13.1 1.0
CA D:LYS31 4.1 14.9 1.0
CA D:LEU32 4.1 13.4 1.0
C D:LYS31 4.2 13.2 1.0
CZ D:ARG198 4.2 11.5 0.6
NH1 D:ARG198 4.4 12.2 0.6
CG D:LYS31 4.5 20.8 1.0
O D:GLY30 4.6 19.5 1.0
O D:LEU32 4.6 20.2 1.0
CB D:LYS31 4.8 16.0 1.0
C D:LEU32 4.9 15.3 1.0

Chlorine binding site 10 out of 10 in 8ori

Go back to Chlorine Binding Sites List in 8ori
Chlorine binding site 10 out of 10 in the Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Crystal Structure of Rhizobium Etli L-Asparaginase Reaiv (Orthorhombic) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl405

b:51.5
occ:1.00
 NH1 D:ARG122 3.1 18.0 1.0
O D:HOH579 3.5 26.6 1.0
CD D:ARG122 3.7 15.6 1.0
CA D:GLN119 3.7 14.3 1.0
N D:GLN119 4.1 13.5 1.0
CB D:GLN119 4.1 15.0 1.0
O D:HOH686 4.2 36.0 1.0
CZ D:ARG122 4.2 15.9 1.0
CG2 D:ILE118 4.3 15.6 1.0
CG D:GLN119 4.3 23.1 1.0
NE D:ARG122 4.4 15.3 1.0
C D:ILE118 4.5 14.1 1.0
O D:ILE118 4.5 15.7 1.0
O D:HOH803 4.8 30.8 1.0
CG D:ARG122 4.9 14.4 1.0
CB D:ARG122 4.9 15.5 1.0
O D:HOH942 5.0 29.3 1.0
C D:GLN119 5.0 14.1 1.0

Reference:

J.I.Loch, P.Worsztynowicz, J.Sliwiak, M.Grzechowiak, B.Imiolczyk, K.Pokrywka, M.Chwastyk, M.Gilski, M.Jaskolski. Rhizobium Etli Has Two L-Asparaginases with Low Sequence Identity But Similar Structure and Catalytic Center. Acta Crystallogr D Struct V. 79 775 2023BIOL.
ISSN: ISSN 2059-7983
PubMed: 37494066
DOI: 10.1107/S2059798323005648
Page generated: Thu Dec 28 03:22:48 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy