Chlorine in PDB 8pnj: Chorismate Mutase
Protein crystallography data
The structure of Chorismate Mutase, PDB code: 8pnj
was solved by
T.Khatanbaatar,
G.Cordara,
U.Krengel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.34 /
2.36
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.608,
105.344,
55.776,
90,
112.48,
90
|
R / Rfree (%)
|
21.5 /
28.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Chorismate Mutase
(pdb code 8pnj). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Chorismate Mutase, PDB code: 8pnj:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 8pnj
Go back to
Chlorine Binding Sites List in 8pnj
Chlorine binding site 1 out
of 2 in the Chorismate Mutase
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Chorismate Mutase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl506
b:38.0
occ:1.00
|
NE2
|
A:HIS276
|
3.1
|
31.8
|
1.0
|
N
|
A:ILE352
|
3.3
|
29.1
|
1.0
|
N
|
A:SER351
|
3.3
|
23.9
|
1.0
|
N
|
A:GLY279
|
3.5
|
33.4
|
1.0
|
CG2
|
A:ILE352
|
3.5
|
29.9
|
1.0
|
CA
|
A:GLY278
|
3.6
|
30.1
|
1.0
|
CB
|
A:ASP350
|
3.7
|
27.6
|
1.0
|
O
|
A:GLY279
|
3.8
|
27.9
|
1.0
|
CD2
|
A:HIS276
|
3.9
|
31.7
|
1.0
|
C
|
A:ASP350
|
4.0
|
25.9
|
1.0
|
CA
|
A:SER351
|
4.0
|
27.3
|
1.0
|
CB
|
A:ILE352
|
4.0
|
30.8
|
1.0
|
CB
|
A:SER351
|
4.1
|
27.9
|
1.0
|
CA
|
A:ASP350
|
4.1
|
27.7
|
1.0
|
C
|
A:GLY278
|
4.1
|
30.0
|
1.0
|
C
|
A:SER351
|
4.1
|
28.2
|
1.0
|
CE1
|
A:HIS276
|
4.2
|
33.3
|
1.0
|
CA
|
A:ILE352
|
4.3
|
31.7
|
1.0
|
N
|
A:GLY278
|
4.4
|
29.8
|
1.0
|
CG
|
A:ASP350
|
4.5
|
29.2
|
1.0
|
C
|
A:GLY279
|
4.6
|
30.0
|
1.0
|
CA
|
A:GLY279
|
4.6
|
33.5
|
1.0
|
C2
|
A:PEG503
|
4.7
|
54.6
|
1.0
|
OG
|
A:SER351
|
4.8
|
29.8
|
1.0
|
O
|
A:ASP350
|
4.9
|
23.4
|
1.0
|
O2
|
A:PEG503
|
4.9
|
53.8
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 8pnj
Go back to
Chlorine Binding Sites List in 8pnj
Chlorine binding site 2 out
of 2 in the Chorismate Mutase
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Chorismate Mutase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl507
b:48.5
occ:1.00
|
OG1
|
A:THR312
|
3.0
|
28.4
|
1.0
|
NH2
|
A:ARG265
|
3.4
|
33.9
|
1.0
|
CZ3
|
A:TRP240
|
3.5
|
39.5
|
1.0
|
NH1
|
A:ARG265
|
3.6
|
35.5
|
1.0
|
OG
|
A:SER260
|
3.7
|
23.9
|
0.8
|
O
|
A:HOH627
|
3.7
|
20.8
|
1.0
|
N
|
A:THR312
|
3.8
|
31.4
|
1.0
|
CE3
|
A:TRP240
|
3.9
|
36.1
|
1.0
|
CZ
|
A:ARG265
|
4.0
|
37.1
|
1.0
|
CH2
|
A:TRP240
|
4.0
|
40.5
|
1.0
|
N
|
A:SER260
|
4.0
|
25.3
|
0.2
|
N
|
A:SER260
|
4.0
|
24.8
|
0.8
|
CB
|
A:SER260
|
4.0
|
24.7
|
0.2
|
CB
|
A:THR312
|
4.0
|
28.9
|
1.0
|
CG2
|
A:THR312
|
4.1
|
30.9
|
1.0
|
CB
|
A:SER260
|
4.1
|
24.2
|
0.8
|
NZ
|
A:LYS377
|
4.2
|
33.5
|
1.0
|
O
|
A:GLY258
|
4.3
|
30.3
|
1.0
|
CA
|
A:THR312
|
4.5
|
30.1
|
1.0
|
CA
|
A:GLY311
|
4.6
|
30.2
|
1.0
|
CD2
|
A:TRP240
|
4.6
|
37.8
|
1.0
|
C
|
A:GLY311
|
4.7
|
30.9
|
1.0
|
CA
|
A:SER260
|
4.7
|
24.9
|
0.2
|
CA
|
A:SER260
|
4.7
|
23.6
|
0.8
|
CZ2
|
A:TRP240
|
4.7
|
38.1
|
1.0
|
CA
|
A:ILE259
|
4.8
|
26.3
|
1.0
|
CE2
|
A:TRP240
|
4.9
|
38.0
|
1.0
|
C
|
A:ILE259
|
5.0
|
26.5
|
1.0
|
|
Reference:
T.Khatanbaatar,
G.Cordara,
U.Krengel.
Structural Analysis of Chorismate Mutase and Cyclohexadienyl Dehydratase From Pseudomonas Aeruginosa To Be Published.
Page generated: Tue Jul 30 11:38:00 2024
|