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Chlorine in PDB 8ppx: Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound

Protein crystallography data

The structure of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound, PDB code: 8ppx was solved by K.Radilova, J.Brynda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.30 / 2.50
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.96, 73.96, 128.18, 90, 90, 120
R / Rfree (%) 22.7 / 25.8

Other elements in 8ppx:

The structure of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Manganese (Mn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound (pdb code 8ppx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound, PDB code: 8ppx:

Chlorine binding site 1 out of 1 in 8ppx

Go back to Chlorine Binding Sites List in 8ppx
Chlorine binding site 1 out of 1 in the Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:67.5
occ:1.00
CZ A:PHE46 4.3 57.0 1.0
CE1 A:PHE46 4.5 55.2 1.0
O A:GLU80 4.6 48.4 1.0
C A:GLY81 4.7 46.4 1.0
O A:GLY81 4.7 53.2 1.0
CG A:ARG82 4.8 45.5 1.0
CD1 A:LEU16 4.8 51.4 1.0
CA A:GLY81 4.9 43.4 1.0

Reference:

K.Radilova, T.Kotacka, M.Kozisek, M.Kral, A.Machara, R.Reiberger, J.Brynda. Influenza A/California/07/2009(H1N1) Endonuclease in Complex with Flavonoid-Like Compound To Be Published.
Page generated: Sat Feb 8 17:18:29 2025

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