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Chlorine in PDB 8pwj: Light Structure of Sensory Rhodopsin-II Solved By Serial Millisecond Crystallography. 30-60 Milliseconds Time-Bin

Protein crystallography data

The structure of Light Structure of Sensory Rhodopsin-II Solved By Serial Millisecond Crystallography. 30-60 Milliseconds Time-Bin, PDB code: 8pwj was solved by R.Bosman, G.Ortolani, G.Branden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.88 / 2.14
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 89.75, 131.7, 51, 90, 90, 90
R / Rfree (%) 24.9 / 31.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Light Structure of Sensory Rhodopsin-II Solved By Serial Millisecond Crystallography. 30-60 Milliseconds Time-Bin (pdb code 8pwj). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Light Structure of Sensory Rhodopsin-II Solved By Serial Millisecond Crystallography. 30-60 Milliseconds Time-Bin, PDB code: 8pwj:

Chlorine binding site 1 out of 1 in 8pwj

Go back to Chlorine Binding Sites List in 8pwj
Chlorine binding site 1 out of 1 in the Light Structure of Sensory Rhodopsin-II Solved By Serial Millisecond Crystallography. 30-60 Milliseconds Time-Bin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Light Structure of Sensory Rhodopsin-II Solved By Serial Millisecond Crystallography. 30-60 Milliseconds Time-Bin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:30.0
occ:0.63
NH1 A:ARG72 2.6 41.9 0.4
NH1 A:ARG72 2.7 53.6 0.6
OH A:TYR73 2.9 47.4 0.6
CZ A:ARG72 3.2 41.4 0.4
CD A:ARG72 3.2 33.2 0.4
O A:HOH414 3.2 53.1 0.6
CE2 A:TYR73 3.3 43.7 0.6
CE2 A:TYR73 3.4 42.8 0.4
N A:PHE69 3.4 43.8 0.4
NE A:ARG72 3.5 31.4 0.4
CZ A:TYR73 3.5 35.6 0.6
CZ A:ARG72 3.8 36.4 0.6
OH A:TYR73 3.8 37.7 0.4
CD A:ARG72 3.8 32.5 0.6
N A:PHE69 3.8 44.2 0.6
O A:HOH414 3.9 45.1 0.4
CZ A:TYR73 3.9 28.2 0.4
NH2 A:ARG72 4.0 21.5 0.4
CA A:VAL68 4.0 48.1 0.4
CD2 A:PHE69 4.1 41.0 0.6
O A:PHE69 4.1 41.5 0.4
NE A:ARG72 4.2 30.6 0.6
CG1 A:VAL68 4.2 49.0 0.4
C A:VAL68 4.2 48.1 0.4
CG A:PRO183 4.3 49.6 0.6
CA A:PHE69 4.3 45.6 0.4
CD2 A:PHE69 4.4 40.3 0.4
CB A:PHE69 4.4 41.1 0.6
CD2 A:TYR73 4.4 38.6 0.4
CB A:PHE69 4.4 41.6 0.4
O A:PHE69 4.5 42.9 0.6
CA A:VAL68 4.5 49.0 0.6
C A:PHE69 4.5 44.9 0.4
CD2 A:TYR73 4.5 40.8 0.6
CG A:ARG72 4.5 32.9 0.4
O A:HOH402 4.6 46.1 0.6
CA A:PHE69 4.6 44.4 0.6
CB A:VAL68 4.6 54.3 0.4
C A:VAL68 4.7 49.0 0.6
O A:THR67 4.7 44.3 0.4
CG1 A:VAL68 4.7 51.7 0.6
CG A:PHE69 4.8 38.9 0.6
CE1 A:TYR73 4.8 32.2 0.6
CG A:PRO183 4.8 53.8 0.4
NH2 A:ARG72 4.8 42.0 0.6
CG2 A:VAL68 4.8 64.1 0.6
CG A:PHE69 4.9 39.9 0.4
CB A:VAL68 4.9 54.1 0.6
C A:PHE69 4.9 45.4 0.6

Reference:

G.Ortolani, R.Bosman, G.Branden, R.Neutze. Structural Basis of the Prolonged Photocycle of Sensory Rhodopsin II Revealed By Serial Millisecond Crystallography To Be Published.
Page generated: Sun Feb 9 06:44:44 2025

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