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Chlorine in PDB 8qs5: Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354)

Protein crystallography data

The structure of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354), PDB code: 8qs5 was solved by M.Konstantinidou, H.Vickery, M.A.M.Pennings, J.Virta, E.J.Visser, M.C.M.Oetelaar, M.Overmans, J.Neitz, C.Ottmann, L.Brunsveld, M.R.Arkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.86 / 2.00
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.969, 150.613, 75.825, 90, 90, 90
R / Rfree (%) 20.2 / 23

Other elements in 8qs5:

The structure of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354) also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Fluorine (F) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354) (pdb code 8qs5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354), PDB code: 8qs5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 8qs5

Go back to Chlorine Binding Sites List in 8qs5
Chlorine binding site 1 out of 2 in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl301

b:46.5
occ:1.00
O A:HOH499 2.7 50.9 1.0
O A:HOH493 2.9 50.8 1.0
CA A:TYR84 3.9 42.5 1.0
O A:GLU83 3.9 40.5 1.0
N A:TYR84 4.1 44.3 1.0
C A:GLU83 4.1 43.2 1.0
CD A:LYS87 4.1 52.8 1.0
CD1 A:TYR84 4.2 46.4 1.0
CB A:LYS87 4.3 46.8 1.0
CB A:TYR84 4.3 42.1 1.0
CB A:GLU83 4.4 45.0 1.0
CG A:TYR84 4.7 43.5 1.0
CG A:LYS87 4.8 51.0 1.0
CA A:GLU83 4.9 45.9 1.0

Chlorine binding site 2 out of 2 in 8qs5

Go back to Chlorine Binding Sites List in 8qs5
Chlorine binding site 2 out of 2 in the Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ternary Structure of 14-3-3S, C-Raf Phosphopeptide (PS259) and Compound 21 (1075354) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl302

b:103.4
occ:1.00
CB A:ASP156 4.2 58.3 1.0
CG A:ASP156 4.4 62.9 1.0
CD A:LYS160 4.6 73.6 1.0
OD1 A:ASP156 4.7 64.8 1.0
OD2 A:ASP156 4.7 67.1 1.0
CE A:LYS160 4.8 80.5 1.0
CA A:ASP156 4.9 53.2 1.0
O A:ASP156 4.9 53.7 1.0
CG A:LYS160 5.0 68.1 1.0

Reference:

M.Konstantinidou, H.Vickery, M.A.M.Pennings, J.Virta, E.J.Visser, M.C.M.Oetelaar, M.Overmans, J.Neitz, C.Ottmann, L.Brunsveld, M.R.Arkin. Small Molecule Stabilization of the 14-3-3SIGMA/Craf Complex Inhibits the Mapk Pathway To Be Published.
Page generated: Sun Jul 13 13:39:10 2025

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