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Chlorine in PDB 8qtl: Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S

Protein crystallography data

The structure of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S, PDB code: 8qtl was solved by G.Sulzenbacher, Y.Bourne, P.Marchot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.97 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 88.343, 116.032, 131.035, 90, 90, 90
R / Rfree (%) 18.2 / 21.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S (pdb code 8qtl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S, PDB code: 8qtl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 8qtl

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Chlorine binding site 1 out of 6 in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl303

b:40.4
occ:1.00
O A:HOH442 3.2 32.7 1.0
N A:TRP86 3.2 33.4 1.0
CA A:ILE85 3.7 34.7 1.0
CB A:ILE85 3.7 35.5 1.0
CD1 A:LEU62 3.9 41.0 1.0
CB A:TRP86 3.9 32.1 1.0
C A:ILE85 4.0 34.0 1.0
CG2 A:ILE85 4.0 36.9 1.0
CD1 A:LEU65 4.1 41.7 1.0
CA A:TRP86 4.2 31.3 1.0
CB A:TYR20 4.2 55.0 1.0
CG A:LEU65 4.3 41.7 1.0
CD2 A:LEU65 4.3 42.4 1.0
O A:TRP86 4.6 27.9 1.0
CD2 A:TYR20 4.7 46.7 1.0
CG A:TYR20 4.9 50.9 1.0
C A:TRP86 4.9 28.9 1.0

Chlorine binding site 2 out of 6 in 8qtl

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Chlorine binding site 2 out of 6 in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:44.1
occ:1.00
N B:TRP86 3.2 34.1 1.0
O B:HOH415 3.3 31.5 1.0
O B:HOH409 3.3 45.5 1.0
CD1 B:LEU62 3.7 40.0 1.0
O B:HOH513 3.8 52.6 1.0
CB B:TRP86 3.8 33.3 1.0
CB B:ILE85 3.8 35.5 1.0
CA B:ILE85 3.8 35.4 1.0
CD1 B:LEU65 4.1 41.4 1.0
C B:ILE85 4.1 33.4 1.0
CA B:TRP86 4.1 32.1 1.0
CB B:TYR20 4.1 49.9 1.0
CG2 B:ILE85 4.2 37.9 1.0
CD2 B:LEU65 4.2 40.8 1.0
CG B:LEU65 4.3 41.0 1.0
O B:TRP86 4.6 28.4 1.0
CG B:TYR20 4.7 45.6 1.0
CD2 B:TYR20 4.7 41.3 1.0
C B:TRP86 4.9 29.2 1.0

Chlorine binding site 3 out of 6 in 8qtl

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Chlorine binding site 3 out of 6 in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:41.3
occ:1.00
O C:HOH445 2.9 41.2 1.0
N C:TRP86 3.2 32.3 1.0
O C:HOH472 3.3 29.0 1.0
CB C:ILE85 3.7 35.0 1.0
CA C:ILE85 3.7 34.6 1.0
CD1 C:LEU62 3.9 37.0 1.0
CB C:TRP86 3.9 31.2 1.0
C C:ILE85 4.0 32.5 1.0
CG2 C:ILE85 4.0 36.9 1.0
CA C:TRP86 4.1 31.1 1.0
CD1 C:LEU65 4.2 35.2 1.0
CB C:TYR20 4.2 55.5 1.0
CD2 C:LEU65 4.3 37.1 1.0
CG C:LEU65 4.4 35.7 1.0
O C:TRP86 4.7 28.7 1.0
N C:TYR20 4.9 69.8 1.0
CD2 C:TYR20 4.9 45.0 1.0
C C:TRP86 5.0 28.7 1.0

Chlorine binding site 4 out of 6 in 8qtl

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Chlorine binding site 4 out of 6 in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:60.4
occ:1.00
NH2 D:ARG183 3.0 42.2 1.0
CG2 D:VAL185 3.9 51.7 1.0
CZ D:ARG183 4.1 41.9 1.0
CD1 D:ILE196 4.3 44.8 1.0
CG1 D:VAL185 4.3 50.8 1.0
NH1 D:ARG183 4.3 44.3 1.0
CB D:VAL185 4.7 50.4 1.0

Chlorine binding site 5 out of 6 in 8qtl

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Chlorine binding site 5 out of 6 in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl303

b:45.5
occ:1.00
N D:TRP86 3.2 35.5 1.0
O D:HOH432 3.3 32.0 1.0
CA D:ILE85 3.8 37.2 1.0
CB D:ILE85 3.8 36.0 1.0
CB D:TYR20 3.9 64.7 1.0
CD1 D:LEU62 3.9 44.2 1.0
CB D:TRP86 4.0 35.2 1.0
C D:ILE85 4.0 36.2 1.0
CD1 D:LEU65 4.1 41.0 1.0
CG2 D:ILE85 4.1 38.4 1.0
CA D:TRP86 4.2 35.0 1.0
CG D:MET19 4.3 89.5 1.0
CD2 D:LEU65 4.3 41.6 1.0
CG D:LEU65 4.3 42.1 1.0
N D:TYR20 4.4 76.6 1.0
O D:TRP86 4.7 32.7 1.0
CA D:TYR20 4.8 68.6 1.0
CG D:TYR20 4.9 58.4 1.0

Chlorine binding site 6 out of 6 in 8qtl

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Chlorine binding site 6 out of 6 in the Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Aplysia Californica Acetylcholine-Binding Protein in Complex with Spiroimine (-)-4 S within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl301

b:47.8
occ:1.00
O E:HOH463 3.1 49.8 1.0
N E:TRP86 3.1 34.9 1.0
O E:HOH436 3.3 35.4 1.0
CA E:ILE85 3.8 38.6 1.0
CB E:ILE85 3.8 38.7 1.0
CB E:TRP86 3.8 35.4 1.0
CD1 E:LEU62 3.9 45.0 1.0
CB E:TYR20 3.9 57.8 1.0
C E:ILE85 3.9 35.9 1.0
CA E:TRP86 4.1 34.4 1.0
CG2 E:ILE85 4.1 40.9 1.0
CD1 E:LEU65 4.2 51.1 1.0
CD2 E:LEU65 4.4 51.4 1.0
CG E:LEU65 4.4 51.5 1.0
O E:TRP86 4.6 29.9 1.0
CG E:TYR20 4.7 56.0 1.0
CD2 E:TYR20 4.7 52.9 1.0
N E:TYR20 4.7 61.4 1.0
C E:TRP86 4.9 31.6 1.0
CA E:TYR20 5.0 58.7 1.0

Reference:

Y.Bourne, G.Sulzenbacher, L.Chabaud, R.Araoz, Z.Radic, S.Conrod, P.Taylor, C.Guillou, J.Molgo, P.Marchot. The Cyclic Imine Core Common to the Marine Macrocyclic Toxins Is Sufficient to Dictate Nicotinic Acetylcholine Receptor Antagonism Mar Drugs V. 22 2024.
ISSN: ESSN 1660-3397
DOI: 10.3390/MD22040149
Page generated: Sun Jul 13 13:40:18 2025

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