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Chlorine in PDB 8rjs: Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State.

Enzymatic activity of Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State.

All present enzymatic activity of Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State.:
2.7.13.3;

Protein crystallography data

The structure of Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State., PDB code: 8rjs was solved by L.Sauthof, A.Schmidt, M.Szczepek, A.S.Brewster, J.F.Kern, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 92.22 / 2.43
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 184.098, 184.098, 180.962, 90, 90, 120
R / Rfree (%) 21 / 24.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State. (pdb code 8rjs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State., PDB code: 8rjs:

Chlorine binding site 1 out of 1 in 8rjs

Go back to Chlorine Binding Sites List in 8rjs
Chlorine binding site 1 out of 1 in the Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Serial Femtosecond X-Ray Structure of A Fluorescence Optimized Bathy Phytochrome PAIRFP2 Derived From Wild-Type AGP2 in I5 Intermediate State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl605

b:97.7
occ:1.00
N B:GLU143 3.7 56.6 1.0
N B:VAL142 3.8 55.5 1.0
CB B:SER141 3.9 55.6 1.0
CB B:GLU143 4.0 56.9 1.0
CB B:VAL142 4.2 56.8 1.0
NH1 B:ARG311 4.3 95.8 1.0
CA B:VAL142 4.4 55.6 1.0
OG B:SER141 4.4 54.5 1.0
CA B:GLU143 4.5 56.6 1.0
CD B:ARG311 4.5 83.6 1.0
C B:VAL142 4.5 56.5 1.0
C B:SER141 4.6 54.2 1.0
CA B:SER141 4.6 56.2 1.0
CG2 B:VAL142 4.8 56.6 1.0

Reference:

L.Sauthof, M.Szczepek, A.Schmidt, A.Bhowmick, M.Dasgupta, M.J.Mackintosh, S.Gul, F.D.Fuller, R.Chatterjee, I.D.Young, N.Michael, N.A.Heyder, B.Bauer, A.Koch, I.Bogacz, I.-S.Kim, P.S.Simon, A.Butryn, P.Aller, V.U.Chukhutsina, J.M.Baxter, C.D.M.Hutchison, D.Liebschner, B.Poon, N.K.Sauter, M.D.Miller, G.N.Phillips Jr., R.Alonso-Mori, M.S.Hunter, A.Batyuk, S.Owada, K.Tono, R.Tanaka, J.J.Van Thor, N.Krauss, T.Lamparter, A.S.Brewster, I.Schapiro, A.M.Orville, V.K.Yachandra, J.Yano, P.Hildebrandt, J.F.Kern, P.Scheerer. Serial-Femtosecond Crystallography Reveals How A Phytochrome Variant Couples Chromophore and Protein Structural Changes Sci Adv 2025.
ISSN: ESSN 2375-2548
Page generated: Sun Jul 13 13:57:04 2025

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