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Chlorine in PDB 8rus: Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121

Enzymatic activity of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121

All present enzymatic activity of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121, PDB code: 8rus was solved by S.Perrett, J.J.Van Thor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.73 / 1.38
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.47, 79.47, 38.32, 90, 90, 90
R / Rfree (%) 14.8 / 20

Other elements in 8rus:

The structure of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121 also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121 (pdb code 8rus). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121, PDB code: 8rus:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 8rus

Go back to Chlorine Binding Sites List in 8rus
Chlorine binding site 1 out of 3 in the Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:38.5
occ:1.00
 HH A:TYR23 2.3 35.5 1.0
OH A:TYR23 3.0 29.6 1.0
HE2 A:TYR23 3.2 31.9 1.0
O A:HOH345 3.3 42.0 1.0
HA3 A:GLY104 3.4 31.7 1.0
CE2 A:TYR23 3.7 26.6 1.0
CZ A:TYR23 3.7 25.1 1.0
HA2 A:GLY104 4.0 31.7 1.0
CA A:GLY104 4.1 26.4 1.0
O A:ARG21 4.6 33.7 1.0
O A:HOH319 4.7 38.8 1.0
N A:GLY104 4.7 26.7 1.0
H A:MET105 4.8 30.6 1.0
H A:GLY104 4.8 32.1 1.0
CD2 A:TYR23 4.9 26.1 1.0
CE1 A:TYR23 4.9 25.9 1.0
HB3 A:ARG21 4.9 50.1 1.0

Chlorine binding site 2 out of 3 in 8rus

Go back to Chlorine Binding Sites List in 8rus
Chlorine binding site 2 out of 3 in the Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:62.3
occ:1.00
 H A:GLY26 2.3 33.8 1.0
HG A:SER24 2.7 42.6 1.0
HB2 A:SER24 2.8 38.7 1.0
HA A:GLN121 2.9 46.8 1.0
HA3 A:GLY26 3.0 32.4 1.0
N A:GLY26 3.1 28.1 1.0
OG A:SER24 3.1 35.5 1.0
HD11 A:ILE124 3.4 52.9 1.0
CB A:SER24 3.4 32.2 1.0
HD13 A:ILE124 3.5 52.9 1.0
CA A:GLY26 3.5 27.0 1.0
HG2 A:GLN121 3.7 69.0 1.0
HG23 A:VAL120 3.7 45.3 1.0
HG12 A:ILE124 3.8 49.5 1.0
CA A:GLN121 3.8 39.0 1.0
CD1 A:ILE124 3.8 44.0 1.0
HB2 A:GLN121 3.9 56.8 1.0
H A:LEU25 4.0 36.1 1.0
N A:LEU25 4.0 30.1 1.0
HB3 A:SER24 4.1 38.7 1.0
N A:GLN121 4.1 36.7 1.0
HA2 A:GLY26 4.2 32.4 1.0
CB A:GLN121 4.2 47.3 1.0
HB3 A:LEU25 4.2 38.0 1.0
C A:SER24 4.2 31.5 1.0
C A:LEU25 4.2 27.1 1.0
H A:ASN27 4.3 32.9 1.0
CG1 A:ILE124 4.3 41.3 1.0
O A:VAL120 4.3 32.5 1.0
CG A:GLN121 4.4 57.4 1.0
C A:VAL120 4.4 35.0 1.0
CA A:SER24 4.4 28.8 1.0
H A:GLN121 4.5 44.1 1.0
CG2 A:VAL120 4.5 37.7 1.0
CA A:LEU25 4.6 28.3 1.0
HG21 A:VAL120 4.6 45.3 1.0
C A:GLY26 4.6 27.4 1.0
O A:SER24 4.7 30.8 1.0
HG3 A:GLN121 4.7 69.0 1.0
HD12 A:ILE124 4.7 52.9 1.0
N A:ASN27 4.8 27.4 1.0
HG13 A:ILE124 4.8 49.5 1.0
CB A:LEU25 4.9 31.6 1.0
HA A:SER24 4.9 34.6 1.0
C A:GLN121 4.9 37.0 1.0
HB A:VAL120 5.0 41.9 1.0
HG23 A:ILE124 5.0 46.3 1.0

Chlorine binding site 3 out of 3 in 8rus

Go back to Chlorine Binding Sites List in 8rus
Chlorine binding site 3 out of 3 in the Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg-White Lysozyme (Hewl) Structure From Euxfel Fxe, Multi-Hit Droplet-on-Demand (Dod) Injection, 9.3 Kev Photon Energy, Space Group P432121 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:59.9
occ:1.00
 H A:THR69 2.5 39.5 0.6
H A:THR69 2.5 39.5 0.4
O A:HOH353 3.1 35.9 1.0
H A:GLY67 3.2 36.3 1.0
O A:THR69 3.2 37.6 1.0
N A:THR69 3.3 32.9 1.0
H A:ARG68 3.3 38.7 1.0
HA2 A:GLY67 3.4 39.7 1.0
OD1 A:ASN65 3.5 47.2 1.0
N A:ARG68 3.5 32.2 1.0
C A:THR69 3.6 36.6 1.0
HB A:THR69 3.6 35.1 1.0
N A:GLY67 3.7 30.3 1.0
C A:GLY67 3.7 33.8 1.0
CA A:GLY67 3.8 33.0 1.0
OG A:SER72 3.8 44.3 1.0
CA A:THR69 3.9 34.1 1.0
O A:HOH349 4.0 43.6 1.0
H A:ASP66 4.0 35.8 1.0
CB A:THR69 4.2 29.2 1.0
HA A:PRO70 4.3 49.2 1.0
C A:ARG68 4.3 35.4 1.0
OD1 A:ASP66 4.3 27.4 1.0
CA A:ARG68 4.4 34.6 1.0
HG1 A:THR69 4.4 36.0 1.0
N A:PRO70 4.4 38.2 1.0
O A:GLY67 4.5 37.5 1.0
HA A:ARG68 4.6 41.5 1.0
H A:SER72 4.6 52.6 1.0
CG A:ASN65 4.7 43.4 1.0
HA A:ASN65 4.7 36.6 1.0
HA3 A:GLY67 4.7 39.7 1.0
N A:ASP66 4.7 29.8 1.0
C A:ASP66 4.7 30.6 1.0
HA A:THR69 4.8 40.9 1.0
NA A:NA204 4.8 38.9 1.0
CA A:PRO70 4.8 41.0 1.0
OG1 A:THR69 4.9 30.0 1.0

Reference:

S.Perrett, A.Fadini, C.D.M.Hutchison, S.Bhattacharya, C.Morrison, O.Turkot, M.B.Jakobsen, M.Grossler, J.Licon-Salaiz, F.Griese, S.Flewett, J.Valerio, J.Schulz, M.Biednov, Y.Jiang, H.Han, H.Yousef, D.Khakhulin, C.Milne, A.Barty, J.J.Van Thor. Kilohertz Droplet-on-Demand Serial Femtosecond Crystallography at the European Xfel Station Fxe. Struct Dyn. V. 11 24310 2024.
ISSN: ESSN 2329-7778
PubMed: 38638699
DOI: 10.1063/4.0000248
Page generated: Tue Jul 30 12:19:29 2024

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