Chlorine in PDB 8s1p: Ylmh Bound to Ptrna-50S

The structure of Ylmh Bound to Ptrna-50S also contains other interesting chemical elements:

Zinc	(Zn)	4 atoms
Potassium	(K)	47 atoms
Magnesium	(Mg)	158 atoms

The binding sites of Chlorine atom in the Ylmh Bound to Ptrna-50S (pdb code 8s1p). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Ylmh Bound to Ptrna-50S, PDB code: 8s1p:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Ylmh Bound to Ptrna-50S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Ylmh Bound to Ptrna-50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl3032 b:82.0 occ:1.00 CL1 A:CLM3032 0.0 82.0 1.0 C1 A:CLM3032 1.7 67.7 1.0 O4' A:G2534 2.5 30.1 1.0 C2 A:CLM3032 2.7 57.4 1.0 CL2 A:CLM3032 2.8 80.0 1.0 N2 A:CLM3032 2.9 47.1 1.0 O5' A:G2534 3.1 30.9 1.0 C4' A:G2534 3.3 30.8 1.0 C1' A:G2534 3.4 29.1 1.0 P A:G2534 3.7 31.2 1.0 OP1 A:G2534 3.7 36.3 1.0 C5' A:G2534 3.7 30.8 1.0 OP2 A:G2534 3.8 33.9 1.0 O2 A:CLM3032 3.8 57.7 1.0 N9 A:G2534 4.2 27.6 1.0 C3 A:CLM3032 4.3 43.0 1.0 C2' A:G2534 4.5 30.3 1.0 O2' A:G2534 4.6 31.7 1.0 C3' A:G2534 4.6 30.6 1.0 C4 A:CLM3032 4.7 42.5 1.0 O4 A:CLM3032 4.7 42.7 1.0 C8 A:G2534 4.8 27.5 1.0 CB b:UNK1 4.8 73.0 1.0 C8 A:2MA2532 4.9 24.2 1.0 O5 A:CLM3032 4.9 41.6 1.0

Chlorine binding site 2 out of 2 in the Ylmh Bound to Ptrna-50S


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Ylmh Bound to Ptrna-50S within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl3032 b:80.0 occ:1.00 CL2 A:CLM3032 0.0 80.0 1.0 C1 A:CLM3032 1.8 67.7 1.0 C2 A:CLM3032 2.7 57.4 1.0 CL1 A:CLM3032 2.8 82.0 1.0 O2 A:CLM3032 2.9 57.7 1.0 N6 A:A2091 3.0 46.2 1.0 O b:UNK1 3.5 72.4 1.0 C b:UNK1 3.6 71.4 1.0 N b:UNK3 3.7 56.6 1.0 N b:UNK2 3.8 67.9 1.0 CA b:UNK2 3.8 66.9 1.0 N2 A:CLM3032 3.9 47.1 1.0 C6 A:A2091 3.9 46.6 1.0 N1 A:A2091 4.1 48.6 1.0 N7 A:2MA2532 4.2 25.3 1.0 C b:UNK2 4.2 62.5 1.0 C8 A:2MA2532 4.3 24.2 1.0 CB b:UNK1 4.3 73.0 1.0 CB b:UNK3 4.4 54.8 1.0 CA b:UNK1 4.5 73.8 1.0 CA b:UNK3 4.7 54.6 1.0 O4' A:G2534 4.9 30.1 1.0

H.Takada, H.Paternoga, K.Fujiwara, J.A.Nakamoto, E.N.Park, L.Dimitrova-Paternoga, B.Beckert, M.Saarma, T.Tenson, A.R.Buskirk, G.C.Atkinson, S.Chiba, D.N.Wilson, V.Hauryliuk. A Role For the S4-Domain Containing Protein Ylmh in Ribosome-Associated Quality Control in Bacillus Subtilis. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38811035
DOI: 10.1093/NAR/GKAE399