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Chlorine in PDB 8slv: Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.

Enzymatic activity of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.

All present enzymatic activity of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.:
3.2.1.20;

Protein crystallography data

The structure of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti., PDB code: 8slv was solved by A.G.Gittis, A.E.Williams, D.Garboczi, E.Calvo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.55 / 2.32
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 48.76, 51.03, 70.75, 101.82, 94.66, 95.76
R / Rfree (%) 14.6 / 18.8

Other elements in 8slv:

The structure of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti. also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti. (pdb code 8slv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti., PDB code: 8slv:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 8slv

Go back to Chlorine Binding Sites List in 8slv
Chlorine binding site 1 out of 4 in the Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl613

b:24.4
occ:1.00
 O A:HOH838 2.9 12.2 1.0
O A:HOH883 3.0 19.6 1.0
NH1 A:ARG346 3.2 18.9 1.0
O A:HOH835 3.3 10.9 1.0
O A:HOH814 3.3 24.8 1.0
CD A:ARG346 3.6 21.2 1.0
CH2 A:TRP22 3.9 18.7 1.0
CG A:GLN311 4.1 15.6 1.0
CA A:GLN311 4.2 15.5 1.0
CZ A:ARG346 4.2 18.2 1.0
NE A:ARG346 4.3 18.1 1.0
CB A:GLN311 4.4 15.1 1.0
CZ2 A:TRP22 4.4 18.2 1.0
O A:ASN345 4.6 27.3 1.0
CA A:ARG346 4.8 19.3 1.0
CD1 A:PHE302 4.8 13.5 1.0
CG A:ARG346 4.8 18.4 1.0
O A:GLN311 4.9 17.2 1.0
CB A:ARG346 4.9 17.3 1.0
CZ3 A:TRP22 4.9 18.8 1.0
O A:ALA310 4.9 16.4 1.0
N A:GLN311 5.0 15.5 1.0

Chlorine binding site 2 out of 4 in 8slv

Go back to Chlorine Binding Sites List in 8slv
Chlorine binding site 2 out of 4 in the Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl614

b:51.1
occ:1.00
 NH1 A:ARG535 3.2 33.2 1.0
NE A:ARG535 3.8 36.3 1.0
CZ A:ARG535 3.9 32.4 1.0
CD2 A:TRP552 4.2 19.6 1.0
CE3 A:TRP552 4.3 17.7 1.0
CE2 A:TRP552 4.4 24.1 1.0
O A:HOH866 4.5 39.7 1.0
CZ3 A:TRP552 4.6 16.7 1.0
CG A:TRP552 4.6 23.1 1.0
CZ2 A:TRP552 4.7 19.2 1.0
CH2 A:TRP552 4.8 20.5 1.0
NE1 A:TRP552 4.9 21.0 1.0
CD1 A:TRP552 5.0 22.2 1.0

Chlorine binding site 3 out of 4 in 8slv

Go back to Chlorine Binding Sites List in 8slv
Chlorine binding site 3 out of 4 in the Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl615

b:23.9
occ:1.00
 NE A:ARG480 3.1 25.9 1.0
NZ A:LYS473 3.4 28.9 1.0
NH2 A:ARG480 3.7 32.9 1.0
CA A:TYR477 3.8 19.6 1.0
CD1 A:TYR477 3.8 18.8 1.0
CZ A:ARG480 3.9 30.9 1.0
CD A:LYS476 3.9 33.0 1.0
CG A:LYS476 3.9 26.0 1.0
N A:TYR477 4.0 19.2 1.0
CB A:TYR477 4.0 16.6 1.0
CD A:ARG480 4.1 25.9 1.0
C A:LYS476 4.3 20.6 1.0
CG A:TYR477 4.4 15.1 1.0
CB A:LYS476 4.5 18.3 1.0
CE A:LYS473 4.5 28.2 1.0
CD A:LYS473 4.5 19.6 1.0
O A:LYS476 4.6 19.5 1.0
CG A:ARG480 4.9 17.5 1.0
CE1 A:TYR477 4.9 14.3 1.0

Chlorine binding site 4 out of 4 in 8slv

Go back to Chlorine Binding Sites List in 8slv
Chlorine binding site 4 out of 4 in the Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of A Salivary Alpha-Glucosidase From the Mosquito Vector Aedes Aegypti. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl616

b:27.6
occ:1.00
 N A:GLY40 3.0 18.9 1.0
N A:LYS440 3.2 25.1 1.0
CA A:GLY40 3.4 20.3 1.0
OD2 A:ASP37 3.6 20.0 1.0
O A:ASP37 3.7 23.6 1.0
CG A:ASP37 3.7 20.7 1.0
N A:ASP39 3.8 21.5 1.0
OG A:SER439 3.8 20.2 1.0
CA A:SER439 3.9 20.9 1.0
C A:SER38 3.9 22.1 1.0
C A:ASP37 3.9 19.6 1.0
CB A:LYS440 4.0 27.1 1.0
CB A:ASP37 4.1 18.2 1.0
C A:SER439 4.1 26.6 1.0
C A:ASP39 4.1 19.4 1.0
OD1 A:ASP37 4.1 21.5 1.0
CA A:LYS440 4.2 29.3 1.0
N A:SER38 4.2 19.8 1.0
CA A:SER38 4.2 24.8 1.0
O A:SER38 4.3 22.9 1.0
CB A:SER439 4.4 20.4 1.0
CA A:ASP39 4.4 25.6 1.0
CD A:LYS440 4.6 36.1 1.0
CA A:ASP37 4.6 18.5 1.0
C A:GLY40 4.7 20.9 1.0
CG A:LYS440 4.7 31.1 1.0
N A:ALA441 4.7 22.8 1.0
C A:LYS440 4.9 22.8 1.0
O A:PHE438 5.0 21.0 1.0

Reference:

A.E.Williams, A.G.Gittis, K.Botello, P.Cruz, I.Martin-Martin, P.C.Valenzuela Leon, B.Sumner, B.Bonilla, E.Calvo. Structural and Functional Comparisons of Salivary Alpha-Glucosidases From the Mosquito Vectors Aedes Aegypti, Anopheles Gambiae, and Culex Quinquefasciatus. Insect Biochem.Mol.Biol. V. 167 04097 2024.
ISSN: ISSN 0965-1748
PubMed: 38428508
DOI: 10.1016/J.IBMB.2024.104097
Page generated: Tue Jul 30 12:30:01 2024

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